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The map label for this gene is ycbY [C]

Identifier: 124028493

GI number: 124028493

Start: 1647313

End: 1648203

Strand: Reverse

Name: ycbY [C]

Synonym: Hbut_1654

Alternate gene names: 124028493

Gene position: 1648203-1647313 (Counterclockwise)

Preceding gene: 124028494

Following gene: 124028492

Centisome position: 98.86

GC content: 51.74

Gene sequence:

>891_bases
TTGAAGCGTGCTAGGCATGAGGGAGCTGCAGCATTGGTTAAGCTACTACTCACAACCAATCCGGGTATAGAGGATATCGC
TGCACACGAAGCAGAAGCCAAGATCTCAGCTAGGCTCCTAGAGGCTAGAGACGGCTTTGGCAGGCTATACGTGGAAGTAG
ATGAGGATATGCTAGAATTCGTCGAGGAGATGAGATCCATACACCGCGCTGTGATAGTGCTCGCAGAATCCAATGTTTGC
CCGGCACGGAGCTGTCTAGAGAAGGTCTACGAGATAGTTAAAGGTAGTGGGGTTGACTTCTACGTTACGCCGTGGACAAG
CTTTGCAGTAAGGGCTGAAAGAGCAGGCACGCACGAGTACACATCACTAGACATAGCAAGGGTTGCAGGCGATGCCGTGA
TAGACGCTGTGAAAAGCAGGTATGGTGTGAGACCGCCAGTTGACCTGGACTATCCAGCAGTGGTGGTTGCTGTCGAGGTT
ATAGAGGACAATATCATGGTTGGTATAGATATTGGCGGCGAACTATCCTGGCACCGCAGAGGCTACAGGATATACGACCA
CCCGGCAGCGTTGAAGCCAACACTAGCCTATGCAATGCTTCTCCTCTCCGGTGCAGCTGATGGCGATACCGTGATGGACC
CCATGTGTGGTGGGGGAACCATAGCTATAGAGGCGGCATACATCTTCGAAGACTCAAGAATCATATGTATGGATAAGAGT
AGAAGACATATCGAGGGCGCAGTACTAAATGCTAGGGCAGCAATGGTTGAGAAGAGGATAGAGTTTATCGTCGGCGATGC
GACCAAGCTGCGGAGGTATGTATCGTCTGTTGATGTGCTTGTCTCTAACCCGCCCTACGGGATAAGAGCTCGGCAGCCCG
AGGGAGGTTAG

Upstream 100 bases:

>100_bases
CAGGTCAAGGCGGCACTTAAGCACATACTGTGGCGCTGCAGTATTACGGGTGGAGAGGCATCAATGCTATACTATTTTGC
TAAGAAGCTGAGAAAGCGGC

Downstream 100 bases:

>100_bases
GGGGCTCTATGCCAGGTTTATAGGGGAGGCTGTGGAGGTTGTGCAGAAGTCCATGACACTGATAACCACCGAGCATGGCT
TTGTCGAGAAGCTACTGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MKRARHEGAAALVKLLLTTNPGIEDIAAHEAEAKISARLLEARDGFGRLYVEVDEDMLEFVEEMRSIHRAVIVLAESNVC
PARSCLEKVYEIVKGSGVDFYVTPWTSFAVRAERAGTHEYTSLDIARVAGDAVIDAVKSRYGVRPPVDLDYPAVVVAVEV
IEDNIMVGIDIGGELSWHRRGYRIYDHPAALKPTLAYAMLLLSGAADGDTVMDPMCGGGTIAIEAAYIFEDSRIICMDKS
RRHIEGAVLNARAAMVEKRIEFIVGDATKLRRYVSSVDVLVSNPPYGIRARQPEGG

Sequences:

>Translated_296_residues
MKRARHEGAAALVKLLLTTNPGIEDIAAHEAEAKISARLLEARDGFGRLYVEVDEDMLEFVEEMRSIHRAVIVLAESNVC
PARSCLEKVYEIVKGSGVDFYVTPWTSFAVRAERAGTHEYTSLDIARVAGDAVIDAVKSRYGVRPPVDLDYPAVVVAVEV
IEDNIMVGIDIGGELSWHRRGYRIYDHPAALKPTLAYAMLLLSGAADGDTVMDPMCGGGTIAIEAAYIFEDSRIICMDKS
RRHIEGAVLNARAAMVEKRIEFIVGDATKLRRYVSSVDVLVSNPPYGIRARQPEGG
>Mature_296_residues
MKRARHEGAAALVKLLLTTNPGIEDIAAHEAEAKISARLLEARDGFGRLYVEVDEDMLEFVEEMRSIHRAVIVLAESNVC
PARSCLEKVYEIVKGSGVDFYVTPWTSFAVRAERAGTHEYTSLDIARVAGDAVIDAVKSRYGVRPPVDLDYPAVVVAVEV
IEDNIMVGIDIGGELSWHRRGYRIYDHPAALKPTLAYAMLLLSGAADGDTVMDPMCGGGTIAIEAAYIFEDSRIICMDKS
RRHIEGAVLNARAAMVEKRIEFIVGDATKLRRYVSSVDVLVSNPPYGIRARQPEGG

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Homo sapiens, GI166197708, Length=194, Percent_Identity=31.4432989690722, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI166197706, Length=194, Percent_Identity=31.4432989690722, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI254553431, Length=187, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1787181, Length=300, Percent_Identity=27, Blast_Score=78, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI32566195, Length=185, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 32435; Mature: 32435

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRARHEGAAALVKLLLTTNPGIEDIAAHEAEAKISARLLEARDGFGRLYVEVDEDMLEF
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHH
VEEMRSIHRAVIVLAESNVCPARSCLEKVYEIVKGSGVDFYVTPWTSFAVRAERAGTHEY
HHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHEEEHHHCCCCCH
TSLDIARVAGDAVIDAVKSRYGVRPPVDLDYPAVVVAVEVIEDNIMVGIDIGGELSWHRR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEEECCCEEEEEEECCCCCCCCC
GYRIYDHPAALKPTLAYAMLLLSGAADGDTVMDPMCGGGTIAIEAAYIFEDSRIICMDKS
CCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEECCC
RRHIEGAVLNARAAMVEKRIEFIVGDATKLRRYVSSVDVLVSNPPYGIRARQPEGG
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRARHEGAAALVKLLLTTNPGIEDIAAHEAEAKISARLLEARDGFGRLYVEVDEDMLEF
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHH
VEEMRSIHRAVIVLAESNVCPARSCLEKVYEIVKGSGVDFYVTPWTSFAVRAERAGTHEY
HHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHEEEHHHCCCCCH
TSLDIARVAGDAVIDAVKSRYGVRPPVDLDYPAVVVAVEVIEDNIMVGIDIGGELSWHRR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEEEECCCEEEEEEECCCCCCCCC
GYRIYDHPAALKPTLAYAMLLLSGAADGDTVMDPMCGGGTIAIEAAYIFEDSRIICMDKS
CCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEECCC
RRHIEGAVLNARAAMVEKRIEFIVGDATKLRRYVSSVDVLVSNPPYGIRARQPEGG
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]