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The map label for this gene is rpl10e

Identifier: 124028492

GI number: 124028492

Start: 1646525

End: 1647067

Strand: Reverse

Name: rpl10e

Synonym: Hbut_1653

Alternate gene names: 124028492

Gene position: 1647067-1646525 (Counterclockwise)

Preceding gene: 124028493

Following gene: 124028491

Centisome position: 98.79

GC content: 53.78

Gene sequence:

>543_bases
ATGCCGCAGAAGCCAGCACGCTGCTACACCAAGAGAAGGTCGAAGGCATTCTCAGGGCCTCCATACACTAGAAAGGAGTA
TATACATGGTGTGCCACCGCCAAAAATACAGAAGTTCGTCATGGGCAATCCGCATGGCGACTATGACTATATAGTAGAAG
TCTATGTCACCGAACGCGGTCAGATAAGGCATAACGCGCTGGAGGCGGCACGTGTAGCTGTGCACAAGTATCTCTCAACA
ACGATTGGCGACCAGAACTACTTCTTCAGGGTCAGGGTGTACCCCCACCATGTGTTGCGCGAGAACAAGATGATGGCGTT
CGCTGGTGCTGACCGTCTACAGGAGGGTATGAGGCAGGCCTTTGGCAAGCCTGTTGGCACAGCTGCAAGAGTCTATCCCG
GCCAGGCTGTGCTAGAGGTGCGGGTCAAGAAGGAACACTTAGACCATGCAAAGGAGGCACTAAGGCGTGGCGCCTCAAAG
CTTCCACTACCATCCCGTATCCGTGTCATACCGTTAAAGGAGGAGGCTAAGGCGGCTGCATAA

Upstream 100 bases:

>100_bases
AACCTATACCCCTTCATAATAGTTGCAAGGCCCTAGGGGGCGCGTATAGCATTTAACCCTACCAGGATACACAAACGGCT
CTCATGGGGTGGCGTAGCCT

Downstream 100 bases:

>100_bases
CAGTGAGCAGAAGCTCTGACTGTGTAAGAATAGTTGATGGTTATCTCTTCGATTTTTCCAAACTCATAGAGCATGTCCGG
AGGTATGGCTACAAGAGGCT

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MPQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPHGDYDYIVEVYVTERGQIRHNALEAARVAVHKYLST
TIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASK
LPLPSRIRVIPLKEEAKAAA

Sequences:

>Translated_180_residues
MPQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPHGDYDYIVEVYVTERGQIRHNALEAARVAVHKYLST
TIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASK
LPLPSRIRVIPLKEEAKAAA
>Mature_179_residues
PQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPHGDYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTT
IGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKL
PLPSRIRVIPLKEEAKAAA

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family

Homologues:

Organism=Homo sapiens, GI223890243, Length=172, Percent_Identity=41.2790697674419, Blast_Score=132, Evalue=1e-31,
Organism=Homo sapiens, GI18152783, Length=172, Percent_Identity=41.2790697674419, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17533037, Length=165, Percent_Identity=41.8181818181818, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6323104, Length=170, Percent_Identity=42.9411764705882, Blast_Score=130, Evalue=1e-31,
Organism=Drosophila melanogaster, GI221513696, Length=172, Percent_Identity=41.8604651162791, Blast_Score=128, Evalue=2e-30,
Organism=Drosophila melanogaster, GI221513692, Length=172, Percent_Identity=41.8604651162791, Blast_Score=128, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_HYPBU (A2BNA6)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013812.1
- ProteinModelPortal:   A2BNA6
- SMR:   A2BNA6
- STRING:   A2BNA6
- GeneID:   4781578
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1653
- eggNOG:   arNOG08034
- HOGENOM:   HBG512729
- OMA:   YTRREYI
- PhylomeDB:   A2BNA6
- ProtClustDB:   PRK04199
- BioCyc:   HBUT415426:HBUT_1653-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00448
- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255
- PANTHER:   PTHR11726
- PIRSF:   PIRSF005590

Pfam domain/function: PF00252 Ribosomal_L16; SSF54686 Ribosomal_L10e/L16

EC number: NA

Molecular weight: Translated: 20490; Mature: 20359

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPHGDYDYIVEVYVTERG
CCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCC
QIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQA
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCEEEEECHHHHHHHHHHH
FGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVIPLKEEAKAAA
HCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHCCCCC
>Mature Secondary Structure 
PQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPHGDYDYIVEVYVTERG
CCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCC
QIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQA
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCEEEEECHHHHHHHHHHH
FGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVIPLKEEAKAAA
HCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA