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The map label for this gene is rpoL [H]

Identifier: 124028487

GI number: 124028487

Start: 1643222

End: 1643539

Strand: Reverse

Name: rpoL [H]

Synonym: Hbut_1648

Alternate gene names: 124028487

Gene position: 1643539-1643222 (Counterclockwise)

Preceding gene: 124028488

Following gene: 124028486

Centisome position: 98.58

GC content: 49.06

Gene sequence:

>318_bases
ATGCCGCAGGCTGGCAGGGTTAAGCTACTAAAACGAGAAGCCAACACTATAGAGGTTGAGCTGGAGGGTGAGGACCAAAC
AATAGCCAACCTAATAGCAAAGTATGCAATACGCAAGCCCGGCGTAGTCTACGCCTCCTACATAATATCGCACCCCCTAG
TTTCAAACCCTGTGATCGTGCTAAGTACGGATGGGAGCCGCGATCCGCTAGATGTACTGGAGGAGGTTCTCAAGGACATA
ATAACTGATGCAAAGAAGTTCATCGAAGAGTTTGACCGGGCCCTTGAAAGCGGTGAAAAGTGTGAAGTTAAAGCCTGA

Upstream 100 bases:

>100_bases
TATCGAACTCCGGGAGGAATGGCGCCGCGGGCTACGTAAGATAGCGGTACTTCTTAAGGGGGCTGAGGCTCCACTAGACC
AGCTAGGTGAGTAGCAGGCC

Downstream 100 bases:

>100_bases
ATCGAGACTTCTACTTTTCCACAGCTGTGGGGATATTGGCCACATAGCTTTAGTGTTTAGAGGCTCCACGCGTGTTGAAG
CATTATTCTTCTCGGAGAGG

Product: DNA-directed RNA polymerase subunit L

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MPQAGRVKLLKREANTIEVELEGEDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIVLSTDGSRDPLDVLEEVLKDI
ITDAKKFIEEFDRALESGEKCEVKA

Sequences:

>Translated_105_residues
MPQAGRVKLLKREANTIEVELEGEDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIVLSTDGSRDPLDVLEEVLKDI
ITDAKKFIEEFDRALESGEKCEVKA
>Mature_104_residues
PQAGRVKLLKREANTIEVELEGEDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIVLSTDGSRDPLDVLEEVLKDII
TDAKKFIEEFDRALESGEKCEVKA

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1761

COG function: function code K; DNA-directed RNA polymerase, subunit L

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009025
- InterPro:   IPR008193
- InterPro:   IPR022905 [H]

Pfam domain/function: NA

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 11654; Mature: 11522

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQAGRVKLLKREANTIEVELEGEDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIV
CCCCCCHHHEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEE
LSTDGSRDPLDVLEEVLKDIITDAKKFIEEFDRALESGEKCEVKA
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PQAGRVKLLKREANTIEVELEGEDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIV
CCCCCHHHEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEE
LSTDGSRDPLDVLEEVLKDIITDAKKFIEEFDRALESGEKCEVKA
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]