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The map label for this gene is rpoM [H]

Identifier: 124028485

GI number: 124028485

Start: 1642486

End: 1642830

Strand: Reverse

Name: rpoM [H]

Synonym: Hbut_1646

Alternate gene names: 124028485

Gene position: 1642830-1642486 (Counterclockwise)

Preceding gene: 124028486

Following gene: 124028484

Centisome position: 98.54

GC content: 55.07

Gene sequence:

>345_bases
GTGAAGTTCTGCCCGCGCTGTGGTTCGCTAATGACGCTGAGGAGGACTAACGACCGTACCGTCTGGGTTTGTCCGAGCTG
CGGCTATACTGAAGAGCTTAGCCAGGCTAGTGAGGCGCAGCTTGCGGTACTGCGCAAGGAGATAAAGCATAGTGAGAAGG
AGAGGATAGTAGTTGTAGACCCCAATGTAAACTGGAAGGCAATGCCTAAGACAAAGGCGGTATGCCCACGGTGTGGCTAC
CACGAGGCGTATGTCTGGGTTGTGCAGACCCGTCGTGCTGACGAGCCACCCACAAGGTTCTTCAAATGCGTAAGCTGCGG
CTACGTGTGGAGGGAGTATGACTAG

Upstream 100 bases:

>100_bases
ACACGCTAGCGAACAAAACTCATAAGCTTAGCTCAAAAGTGCCCAGTTTCTCCGGCTAGCTACAGACCGGTCAAAACAGC
GTAGCGGGGTGTAGTGTGCC

Downstream 100 bases:

>100_bases
CAGCAACGTGTGCATACACTACGAATTCTTCTATAGGCTCTTACGCAAGCTATACGAGGATGTTTTCGAGGCCTACAACC
GTACACCACCAGTGATATCC

Product: DNA-directed RNA polymerase subunit M

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKFCPRCGSLMTLRRTNDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIVVVDPNVNWKAMPKTKAVCPRCGY
HEAYVWVVQTRRADEPPTRFFKCVSCGYVWREYD

Sequences:

>Translated_114_residues
MKFCPRCGSLMTLRRTNDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIVVVDPNVNWKAMPKTKAVCPRCGY
HEAYVWVVQTRRADEPPTRFFKCVSCGYVWREYD
>Mature_114_residues
MKFCPRCGSLMTLRRTNDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIVVVDPNVNWKAMPKTKAVCPRCGY
HEAYVWVVQTRRADEPPTRFFKCVSCGYVWREYD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320250, Length=117, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=1e-11,
Organism=Drosophila melanogaster, GI78707272, Length=114, Percent_Identity=30.7017543859649, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 13323; Mature: 13323

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
7.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFCPRCGSLMTLRRTNDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIVVVD
CCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PNVNWKAMPKTKAVCPRCGYHEAYVWVVQTRRADEPPTRFFKCVSCGYVWREYD
CCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MKFCPRCGSLMTLRRTNDRTVWVCPSCGYTEELSQASEAQLAVLRKEIKHSEKERIVVVD
CCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
PNVNWKAMPKTKAVCPRCGYHEAYVWVVQTRRADEPPTRFFKCVSCGYVWREYD
CCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8502569 [H]