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The map label for this gene is rpl44e [H]

Identifier: 124028481

GI number: 124028481

Start: 1639481

End: 1639768

Strand: Reverse

Name: rpl44e [H]

Synonym: Hbut_1642

Alternate gene names: 124028481

Gene position: 1639768-1639481 (Counterclockwise)

Preceding gene: 124028482

Following gene: 124028480

Centisome position: 98.36

GC content: 48.26

Gene sequence:

>288_bases
ATGAAGGTGCCAAAGGTCATTATAACGTATTGTCCCCGATGCCGTACACATACACAGCACAGTGTTACGGTATATAAGCA
TGGCAAGAGACGTAGCCTAGCTGAGGGCGAGAGGAGGTATAGGAGAAAGCAAGAGGGTTATGGTAGCAAGAGGAAGCCGG
AGCAGAAGCGCTTCGCGAAAGTTACAAAGAAGATAGTATTAAAGCTTAAGTGTCAGAAGTGTGGTTACATACTACACCGC
CGGGGTATTAGGCTCAAGAAGGTAGAGCTGGTGGAGGTGAGGCACTAG

Upstream 100 bases:

>100_bases
ACAGGGCTGAAGGAGGCTCGGGAGCAATAGTAGGGTTTTAAGGCGGGTTTTGCCTAGGGTGTGATGGGCACGCTAGGGGA
GTCTACGAGGCGGCTAGGCC

Downstream 100 bases:

>100_bases
CATGGTCAGTAAGTTCAAGATACTAGTACCACAGCCGCGTAGCAGGTTCCTCCTAGTGAGATGCCCGGTTTGCGGTAATG
AGCAAGTGATATTCAGCCAT

Product: 50S ribosomal protein L44e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MKVPKVIITYCPRCRTHTQHSVTVYKHGKRRSLAEGERRYRRKQEGYGSKRKPEQKRFAKVTKKIVLKLKCQKCGYILHR
RGIRLKKVELVEVRH

Sequences:

>Translated_95_residues
MKVPKVIITYCPRCRTHTQHSVTVYKHGKRRSLAEGERRYRRKQEGYGSKRKPEQKRFAKVTKKIVLKLKCQKCGYILHR
RGIRLKKVELVEVRH
>Mature_95_residues
MKVPKVIITYCPRCRTHTQHSVTVYKHGKRRSLAEGERRYRRKQEGYGSKRKPEQKRFAKVTKKIVLKLKCQKCGYILHR
RGIRLKKVELVEVRH

Specific function: Unknown

COG id: COG1631

COG function: function code J; Ribosomal protein L44E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L44e family [H]

Homologues:

Organism=Homo sapiens, GI10445223, Length=71, Percent_Identity=52.112676056338, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI4506651, Length=71, Percent_Identity=52.112676056338, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17531725, Length=75, Percent_Identity=50.6666666666667, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6681849, Length=76, Percent_Identity=53.9473684210526, Blast_Score=62, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321934, Length=76, Percent_Identity=53.9473684210526, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582672, Length=76, Percent_Identity=48.6842105263158, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000552
- InterPro:   IPR011332
- ProDom:   PD002841 [H]

Pfam domain/function: PF00935 Ribosomal_L44 [H]

EC number: NA

Molecular weight: Translated: 11415; Mature: 11415

Theoretical pI: Translated: 11.45; Mature: 11.45

Prosite motif: PS01172 RIBOSOMAL_L44E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVPKVIITYCPRCRTHTQHSVTVYKHGKRRSLAEGERRYRRKQEGYGSKRKPEQKRFAK
CCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VTKKIVLKLKCQKCGYILHRRGIRLKKVELVEVRH
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
>Mature Secondary Structure
MKVPKVIITYCPRCRTHTQHSVTVYKHGKRRSLAEGERRYRRKQEGYGSKRKPEQKRFAK
CCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
VTKKIVLKLKCQKCGYILHRRGIRLKKVELVEVRH
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]