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The map label for this gene is radB [H]

Identifier: 124028477

GI number: 124028477

Start: 1637052

End: 1637654

Strand: Direct

Name: radB [H]

Synonym: Hbut_1638

Alternate gene names: 124028477

Gene position: 1637052-1637654 (Clockwise)

Preceding gene: 124028471

Following gene: 124028478

Centisome position: 98.19

GC content: 49.25

Gene sequence:

>603_bases
GTGGCTATATGCAGAAGGCTGCTGAGGGCCATAGAGTGGCCTACAACACTACTGGTATATGGGCCTGCAGGGAGCGGAAA
GACCCTCCTAGCTCTCGAGCTTACAGCGCACCAGTGTAGAAGCGGAAAATGCCTGTACATAACTACTGAAGGTGTACAGT
TTCTCGAGAGGGCAGCAAAGCTGAAACTTAGTGCTGACCAGCTAGTGGTGCTCCAGGTCTTTGACTACCTTGACCTACTA
CATATTGTTAATCTACGCCAGCTGCCACTCTATAATATCGTTGTTCTTGACTCTGTAAGCAGTATAGCACGTGAAGGCTC
CGAAGAGGCCTTGAGAACCTTATCTCTGGTTTCAGCACTTCTATACCGCGTGTACGAAGAATACATGGTTCCAATACTGT
ATACCGCACAGCTATCCTGGAAGCCAGGAGAAGGCGAGAAGCCTTCTGGAATAAAGCCTCTAAGCCTGTGGCTTAGAGCT
ATAGCTCGACTTGAACGCGTTGGGCAGAGATATAGGCTTATCATCGAGGAGCCAGAGCATAACCGCGGATGGGAGTTCAG
CTACAGAATTACGGAGCGGGGACTTGTATGGCTCAATTGTTAA

Upstream 100 bases:

>100_bases
ACTATCTCCGGGCTAGACGCCCACACTATTATCCTGCTGGTAGTCCCTACTGTTTTAATCCCGGACAACCCCCTGGTGCT
GGTTCTCCTGGGAGGCTTAT

Downstream 100 bases:

>100_bases
CCCCTCTAGAGTCCATACTTGCTATCATTCCCGCACTAGCAGCTAATGGTGCACCCGTCCTGCTAAAATACCATGGAACA
CCAATTGACGGTGGCAAACG

Product: DNA repair and recombination protein radB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAICRRLLRAIEWPTTLLVYGPAGSGKTLLALELTAHQCRSGKCLYITTEGVQFLERAAKLKLSADQLVVLQVFDYLDLL
HIVNLRQLPLYNIVVLDSVSSIAREGSEEALRTLSLVSALLYRVYEEYMVPILYTAQLSWKPGEGEKPSGIKPLSLWLRA
IARLERVGQRYRLIIEEPEHNRGWEFSYRITERGLVWLNC

Sequences:

>Translated_200_residues
MAICRRLLRAIEWPTTLLVYGPAGSGKTLLALELTAHQCRSGKCLYITTEGVQFLERAAKLKLSADQLVVLQVFDYLDLL
HIVNLRQLPLYNIVVLDSVSSIAREGSEEALRTLSLVSALLYRVYEEYMVPILYTAQLSWKPGEGEKPSGIKPLSLWLRA
IARLERVGQRYRLIIEEPEHNRGWEFSYRITERGLVWLNC
>Mature_199_residues
AICRRLLRAIEWPTTLLVYGPAGSGKTLLALELTAHQCRSGKCLYITTEGVQFLERAAKLKLSADQLVVLQVFDYLDLLH
IVNLRQLPLYNIVVLDSVSSIAREGSEEALRTLSLVSALLYRVYEEYMVPILYTAQLSWKPGEGEKPSGIKPLSLWLRAI
ARLERVGQRYRLIIEEPEHNRGWEFSYRITERGLVWLNC

Specific function: Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange [H]

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic recA-like protein family. RadB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013632
- InterPro:   IPR011939
- InterPro:   IPR020588 [H]

Pfam domain/function: PF08423 Rad51 [H]

EC number: NA

Molecular weight: Translated: 22875; Mature: 22744

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAICRRLLRAIEWPTTLLVYGPAGSGKTLLALELTAHQCRSGKCLYITTEGVQFLERAAK
CHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEHHHCCCCCEEEEECHHHHHHHHHHH
LKLSADQLVVLQVFDYLDLLHIVNLRQLPLYNIVVLDSVSSIAREGSEEALRTLSLVSAL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHH
LYRVYEEYMVPILYTAQLSWKPGEGEKPSGIKPLSLWLRAIARLERVGQRYRLIIEEPEH
HHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCHHEEEEEECCCC
NRGWEFSYRITERGLVWLNC
CCCCEEEEEEECCCEEEEEC
>Mature Secondary Structure 
AICRRLLRAIEWPTTLLVYGPAGSGKTLLALELTAHQCRSGKCLYITTEGVQFLERAAK
HHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEHHHCCCCCEEEEECHHHHHHHHHHH
LKLSADQLVVLQVFDYLDLLHIVNLRQLPLYNIVVLDSVSSIAREGSEEALRTLSLVSAL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHH
LYRVYEEYMVPILYTAQLSWKPGEGEKPSGIKPLSLWLRAIARLERVGQRYRLIIEEPEH
HHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCHHEEEEEECCCC
NRGWEFSYRITERGLVWLNC
CCCCEEEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]