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The map label for this gene is 124028475

Identifier: 124028475

GI number: 124028475

Start: 1635042

End: 1636325

Strand: Reverse

Name: 124028475

Synonym: Hbut_1636

Alternate gene names: NA

Gene position: 1636325-1635042 (Counterclockwise)

Preceding gene: 124028476

Following gene: 124028474

Centisome position: 98.15

GC content: 51.64

Gene sequence:

>1284_bases
ATGAGGATGAGGCTCTACATGGAGCCAGGCAGGATAGTAAGAATCGTGGGTCCAGCGAGAGCACGCGTAGCATCGGGACA
AGTCATGGTTCTAGGCGCAATATTCGGTGCCGGCGCCGAATTCAGCATACACAGCTACCGTAGCTATGGCGTTAAAGCAC
TAGACGATAGCATTGTTGAAGTAGAGCTTGGTGCCGGCGCAGCCGTCGAGAGCCCTCAACCAGGCGAGGAAGTTCTCGAC
GCGTGGGTCTCGGCTGTAGATAGCACACTGAGACGTGGTTGTAAAAGAGTAATGGTCCTGGGTCCTACAGATGCTGGCAA
GTCTAGCCTTACTGCACTAGTGGTAAACCGGGCACTACTTTACGGATTTAGGGTAGGAGTAGTAGATGCTGATGTCGGAC
AAGCGGATGTAGGCCCACCAGCGTCTGTCTCAGCGGCTCTAGTGGATAAGCCTATACTCTGGCTCCGGGAACTCAGAGCA
GACCACATAAGGTTCATAGGCAACATAACGCCACAGCGTAGCGAGCGCCGGATAGTAGCAGCAGTCGTGGAGCTAGTACA
CCGGCTCCTCAGCCGTGGCGCAGAGGTAATAGCAATAGATACCGATGGCTGGGTTCAAGGGCTAAACTCGATAGAGTACA
AGGCTGAGATTGCGCGCTACACGGGGGTATCAGCAGTATTCGTTATAGGAGACCAGAAGCTCTATGCGATGGTTAGACAT
GTATTCGCGGGTATCCCATGTGGCGTTACGCTATTACCAATGCCGAGTGTTAGGCGTGAGAGAGATAGAGTAGAGAGGAG
GAGCCTACGTAGAGAAGCTTATCGTAGATATCTTGAGCCCCTCTACGAGAGAATGATATACATAGATTCAGTCTCAATAA
TGGGCTCTTGTTTCTTTAGCGGAGAAAGGTTGCCACCTCAGCAGGCGGCAAGGCTGGCTCAGATTCTCCAGGTGCCGGTT
ATAGCTGCTAGTGAGACCTACGACACGGTATACGTTGTCACCAACGGTCAACCGAACCCGCAGAATCTTGAGAAAGCATC
GCAGACTTTGCAAAAGCAAGTCTACATACTAGACATAAACCTCGCAGTAAATGCTCTAGCCTCCCTGGTTGGCAGTGATG
GCGAGGAAAAAGGGTTGGCAATAGTGAAGGAGATAGACTTTGCCAGCGGAGTTATAAGGGTGCTAACACCCTATCGGGGC
GAGGTTAAGGGATTAATCCTGGGCAACATTAGGCTAAGTGAGGAGCTAGAAGAAACTGGGAGGCCACTGAGATGCGTAAT
CTAG

Upstream 100 bases:

>100_bases
GTTAACGATGACGTGTTGGCAGCTATACAGATAGCTTTACGCGTCTATACGAAGATGCACAGAGTACTGGAGAACACATG
GCTGGTAGAGGGTGAACAAT

Downstream 100 bases:

>100_bases
ATGGTGCGCTTGCCCCGGTACTAGAGCATCTGGTCAAGAAGGGTGCATCAATAGTCTGGGCAGAAGGTAGGCTCAGCAGA
GTCTACGAAGCTGCAAGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Polynucleotide kinase PF0112 [H]

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MRMRLYMEPGRIVRIVGPARARVASGQVMVLGAIFGAGAEFSIHSYRSYGVKALDDSIVEVELGAGAAVESPQPGEEVLD
AWVSAVDSTLRRGCKRVMVLGPTDAGKSSLTALVVNRALLYGFRVGVVDADVGQADVGPPASVSAALVDKPILWLRELRA
DHIRFIGNITPQRSERRIVAAVVELVHRLLSRGAEVIAIDTDGWVQGLNSIEYKAEIARYTGVSAVFVIGDQKLYAMVRH
VFAGIPCGVTLLPMPSVRRERDRVERRSLRREAYRRYLEPLYERMIYIDSVSIMGSCFFSGERLPPQQAARLAQILQVPV
IAASETYDTVYVVTNGQPNPQNLEKASQTLQKQVYILDINLAVNALASLVGSDGEEKGLAIVKEIDFASGVIRVLTPYRG
EVKGLILGNIRLSEELEETGRPLRCVI

Sequences:

>Translated_427_residues
MRMRLYMEPGRIVRIVGPARARVASGQVMVLGAIFGAGAEFSIHSYRSYGVKALDDSIVEVELGAGAAVESPQPGEEVLD
AWVSAVDSTLRRGCKRVMVLGPTDAGKSSLTALVVNRALLYGFRVGVVDADVGQADVGPPASVSAALVDKPILWLRELRA
DHIRFIGNITPQRSERRIVAAVVELVHRLLSRGAEVIAIDTDGWVQGLNSIEYKAEIARYTGVSAVFVIGDQKLYAMVRH
VFAGIPCGVTLLPMPSVRRERDRVERRSLRREAYRRYLEPLYERMIYIDSVSIMGSCFFSGERLPPQQAARLAQILQVPV
IAASETYDTVYVVTNGQPNPQNLEKASQTLQKQVYILDINLAVNALASLVGSDGEEKGLAIVKEIDFASGVIRVLTPYRG
EVKGLILGNIRLSEELEETGRPLRCVI
>Mature_427_residues
MRMRLYMEPGRIVRIVGPARARVASGQVMVLGAIFGAGAEFSIHSYRSYGVKALDDSIVEVELGAGAAVESPQPGEEVLD
AWVSAVDSTLRRGCKRVMVLGPTDAGKSSLTALVVNRALLYGFRVGVVDADVGQADVGPPASVSAALVDKPILWLRELRA
DHIRFIGNITPQRSERRIVAAVVELVHRLLSRGAEVIAIDTDGWVQGLNSIEYKAEIARYTGVSAVFVIGDQKLYAMVRH
VFAGIPCGVTLLPMPSVRRERDRVERRSLRREAYRRYLEPLYERMIYIDSVSIMGSCFFSGERLPPQQAARLAQILQVPV
IAASETYDTVYVVTNGQPNPQNLEKASQTLQKQVYILDINLAVNALASLVGSDGEEKGLAIVKEIDFASGVIRVLTPYRG
EVKGLILGNIRLSEELEETGRPLRCVI

Specific function: Polynucleotide kinase that can phosphorylate the 5'- hydroxyl groups of both single-stranded RNA (ssRNA) and single- stranded DNA (ssDNA). Exhibits a strong preference for ssRNA [H]

COG id: COG1341

COG function: function code R; Predicted GTPase or GTP-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI5803029, Length=202, Percent_Identity=29.2079207920792, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010655 [H]

Pfam domain/function: PF06807 Clp1 [H]

EC number: =2.7.1.78 [H]

Molecular weight: Translated: 46740; Mature: 46740

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMRLYMEPGRIVRIVGPARARVASGQVMVLGAIFGAGAEFSIHSYRSYGVKALDDSIVE
CCEEEEECCCCEEEEECCCHHHCCCCCEEEEEEECCCCCCEEEHHHHHCCCHHCCCCEEE
VELGAGAAVESPQPGEEVLDAWVSAVDSTLRRGCKRVMVLGPTDAGKSSLTALVVNRALL
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH
YGFRVGVVDADVGQADVGPPASVSAALVDKPILWLRELRADHIRFIGNITPQRSERRIVA
HHEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AVVELVHRLLSRGAEVIAIDTDGWVQGLNSIEYKAEIARYTGVSAVFVIGDQKLYAMVRH
HHHHHHHHHHHCCCEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
VFAGIPCGVTLLPMPSVRRERDRVERRSLRREAYRRYLEPLYERMIYIDSVSIMGSCFFS
HHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
GERLPPQQAARLAQILQVPVIAASETYDTVYVVTNGQPNPQNLEKASQTLQKQVYILDIN
CCCCCHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHEEEEEEEH
LAVNALASLVGSDGEEKGLAIVKEIDFASGVIRVLTPYRGEVKGLILGNIRLSEELEETG
HHHHHHHHHHCCCCCCCCCEEEEHHHHHCCHHHHHCCCCCCEEEEEEECEEEHHHHHHCC
RPLRCVI
CCEEECC
>Mature Secondary Structure
MRMRLYMEPGRIVRIVGPARARVASGQVMVLGAIFGAGAEFSIHSYRSYGVKALDDSIVE
CCEEEEECCCCEEEEECCCHHHCCCCCEEEEEEECCCCCCEEEHHHHHCCCHHCCCCEEE
VELGAGAAVESPQPGEEVLDAWVSAVDSTLRRGCKRVMVLGPTDAGKSSLTALVVNRALL
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH
YGFRVGVVDADVGQADVGPPASVSAALVDKPILWLRELRADHIRFIGNITPQRSERRIVA
HHEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AVVELVHRLLSRGAEVIAIDTDGWVQGLNSIEYKAEIARYTGVSAVFVIGDQKLYAMVRH
HHHHHHHHHHHCCCEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
VFAGIPCGVTLLPMPSVRRERDRVERRSLRREAYRRYLEPLYERMIYIDSVSIMGSCFFS
HHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
GERLPPQQAARLAQILQVPVIAASETYDTVYVVTNGQPNPQNLEKASQTLQKQVYILDIN
CCCCCHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHEEEEEEEH
LAVNALASLVGSDGEEKGLAIVKEIDFASGVIRVLTPYRGEVKGLILGNIRLSEELEETG
HHHHHHHHHHCCCCCCCCCEEEEHHHHHCCHHHHHCCCCCCEEEEEEECEEEHHHHHHCC
RPLRCVI
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA