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The map label for this gene is yigC [C]

Identifier: 124028474

GI number: 124028474

Start: 1633765

End: 1635054

Strand: Reverse

Name: yigC [C]

Synonym: Hbut_1635

Alternate gene names: 124028474

Gene position: 1635054-1633765 (Counterclockwise)

Preceding gene: 124028475

Following gene: 124028473

Centisome position: 98.07

GC content: 51.71

Gene sequence:

>1290_bases
ATGCGTAATCTAGATGGTGCGCTTGCCCCGGTACTAGAGCATCTGGTCAAGAAGGGTGCATCAATAGTCTGGGCAGAAGG
TAGGCTCAGCAGAGTCTACGAAGCTGCAAGGTTTGCTGCACAGCTTGATGGACGTGCAGTAGCTGTCTACAATATTAAGG
AGCTACCCTATGTTTTCGCTTCAAACATAGTATATAGTCGCAAGATACTATACATGCTCCTCGAAGCCGATAGTGATATG
TCAGCTTACGAGAAAATATTATCGCTAAAACCAGAGAGCCTTGCTAGAGGCGAGTTTAGCGATTACTTTGAGGAAGCAGG
CTCGGGGCTGGATCTGCTGCCAGCACTGAGATTCTATGAAGGTGATGGAGGACTATATGTGACATCATCGATATTCATAG
CGTGTAATGGTAAAGCTTGTAATGCGTCGATACATCGTATAATGGTTAGCGACGACTATAGTTATGCAGCTGTTAGGGTT
GTCCCACGCCACCTCTACCGGATACTAATGGAGCGTGGTGGCTCGACACCTGTAGCAGTCGTTGTGGGTGTGGATCCCAG
GATAATGCTTGCAGCTGCACTCAGCCCTCCATTTGGAGTCTTCGAGCTAGAGCTTGCTGCAGCACTAACTGGAGGGCTTA
GGGTTTGCGAGACCCCCAGGTACAGGCTGCCAGTTCCTTGTGGGGCATCCATGGTTATAGAGGCTGTACTTGGGCCAGAG
CGGCGCTCCGAAGGACCCTTTGTAGACCTGCTAGGACTCTACGATAACGTACGCAGCGAGCCGGAGCTGAAAGTAGAGTC
TATCTACGTAAACAAGGTATACGAGCCCGTGCTACACGCTATACTGCCGGGAGGTACGGAGCACAAGCTATTCATGGGTT
TCCCTCGCGAAGCCTCGATATACGATGCTGTACGCCGTGTTGTGCCGCGTGTGGTAAAGGTTAGGCTTACACCTGGTTCG
GGTATGTGGTTACATGCTGTCATTTCGATAGAAAAACAGCATGATGGAGATGGCAAGAATGCTGGGCTTGCAGCGCTAGC
AGGCCATCCAAGCCTAAAGCACGTAGTGGTGGTTGACGCGGACATAGACCCTGATGACCCCCAACAAGTGGAGTGGGCTA
TAGCTACGAGGCTCCAGGCGGACCGTGGCATAGTCATAGTCTCCCATGCGAGGGGGTCAACACTCGACCCAAGTGCTGTC
GACGGGCTAACAGCCAAGCTCATCGTGGATGCTACTGTACCCATTGGGGAGAGGAGCAGGTACACTAGGCCCATAATACC
GGGATCATAG

Upstream 100 bases:

>100_bases
TTATAAGGGTGCTAACACCCTATCGGGGCGAGGTTAAGGGATTAATCCTGGGCAACATTAGGCTAAGTGAGGAGCTAGAA
GAAACTGGGAGGCCACTGAG

Downstream 100 bases:

>100_bases
TCGCGCAGTGAGGGTTGAGCGATAGCAAGGGTGTAAGCGGCTATGTATCTTACACGTGAGGAGGAACGTATGCTTAGTGG
CGAGTACGGCGAGGCTGTGC

Product: 3-octaprenyl-4-hydroxybenzoate carboxylase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MRNLDGALAPVLEHLVKKGASIVWAEGRLSRVYEAARFAAQLDGRAVAVYNIKELPYVFASNIVYSRKILYMLLEADSDM
SAYEKILSLKPESLARGEFSDYFEEAGSGLDLLPALRFYEGDGGLYVTSSIFIACNGKACNASIHRIMVSDDYSYAAVRV
VPRHLYRILMERGGSTPVAVVVGVDPRIMLAAALSPPFGVFELELAAALTGGLRVCETPRYRLPVPCGASMVIEAVLGPE
RRSEGPFVDLLGLYDNVRSEPELKVESIYVNKVYEPVLHAILPGGTEHKLFMGFPREASIYDAVRRVVPRVVKVRLTPGS
GMWLHAVISIEKQHDGDGKNAGLAALAGHPSLKHVVVVDADIDPDDPQQVEWAIATRLQADRGIVIVSHARGSTLDPSAV
DGLTAKLIVDATVPIGERSRYTRPIIPGS

Sequences:

>Translated_429_residues
MRNLDGALAPVLEHLVKKGASIVWAEGRLSRVYEAARFAAQLDGRAVAVYNIKELPYVFASNIVYSRKILYMLLEADSDM
SAYEKILSLKPESLARGEFSDYFEEAGSGLDLLPALRFYEGDGGLYVTSSIFIACNGKACNASIHRIMVSDDYSYAAVRV
VPRHLYRILMERGGSTPVAVVVGVDPRIMLAAALSPPFGVFELELAAALTGGLRVCETPRYRLPVPCGASMVIEAVLGPE
RRSEGPFVDLLGLYDNVRSEPELKVESIYVNKVYEPVLHAILPGGTEHKLFMGFPREASIYDAVRRVVPRVVKVRLTPGS
GMWLHAVISIEKQHDGDGKNAGLAALAGHPSLKHVVVVDADIDPDDPQQVEWAIATRLQADRGIVIVSHARGSTLDPSAV
DGLTAKLIVDATVPIGERSRYTRPIIPGS
>Mature_429_residues
MRNLDGALAPVLEHLVKKGASIVWAEGRLSRVYEAARFAAQLDGRAVAVYNIKELPYVFASNIVYSRKILYMLLEADSDM
SAYEKILSLKPESLARGEFSDYFEEAGSGLDLLPALRFYEGDGGLYVTSSIFIACNGKACNASIHRIMVSDDYSYAAVRV
VPRHLYRILMERGGSTPVAVVVGVDPRIMLAAALSPPFGVFELELAAALTGGLRVCETPRYRLPVPCGASMVIEAVLGPE
RRSEGPFVDLLGLYDNVRSEPELKVESIYVNKVYEPVLHAILPGGTEHKLFMGFPREASIYDAVRRVVPRVVKVRLTPGS
GMWLHAVISIEKQHDGDGKNAGLAALAGHPSLKHVVVVDADIDPDDPQQVEWAIATRLQADRGIVIVSHARGSTLDPSAV
DGLTAKLIVDATVPIGERSRYTRPIIPGS

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=262, Percent_Identity=29.7709923664122, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 46645; Mature: 46645

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLDGALAPVLEHLVKKGASIVWAEGRLSRVYEAARFAAQLDGRAVAVYNIKELPYVFA
CCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCHHHH
SNIVYSRKILYMLLEADSDMSAYEKILSLKPESLARGEFSDYFEEAGSGLDLLPALRFYE
HHHHHHHEEEEEEEECCCCHHHHHHHHHCCCHHHHCCCHHHHHHHHCCCCCCCCCEEEEE
GDGGLYVTSSIFIACNGKACNASIHRIMVSDDYSYAAVRVVPRHLYRILMERGGSTPVAV
CCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCEEE
VVGVDPRIMLAAALSPPFGVFELELAAALTGGLRVCETPRYRLPVPCGASMVIEAVLGPE
EEECCCCEEEEEECCCCCCEEEHHHHHHHHCCCEEECCCCCEECCCCCHHHHHHHHHCCC
RRSEGPFVDLLGLYDNVRSEPELKVESIYVNKVYEPVLHAILPGGTEHKLFMGFPREASI
CCCCCCEEEEHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
YDAVRRVVPRVVKVRLTPGSGMWLHAVISIEKQHDGDGKNAGLAALAGHPSLKHVVVVDA
HHHHHHHHHHEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEC
DIDPDDPQQVEWAIATRLQADRGIVIVSHARGSTLDPSAVDGLTAKLIVDATVPIGERSR
CCCCCCCHHHHHHHHHHEECCCCEEEEEECCCCCCCCHHHCCCEEEEEEEEECCCCCCCC
YTRPIIPGS
CCCCCCCCC
>Mature Secondary Structure
MRNLDGALAPVLEHLVKKGASIVWAEGRLSRVYEAARFAAQLDGRAVAVYNIKELPYVFA
CCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEHHHCCHHHH
SNIVYSRKILYMLLEADSDMSAYEKILSLKPESLARGEFSDYFEEAGSGLDLLPALRFYE
HHHHHHHEEEEEEEECCCCHHHHHHHHHCCCHHHHCCCHHHHHHHHCCCCCCCCCEEEEE
GDGGLYVTSSIFIACNGKACNASIHRIMVSDDYSYAAVRVVPRHLYRILMERGGSTPVAV
CCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCEEE
VVGVDPRIMLAAALSPPFGVFELELAAALTGGLRVCETPRYRLPVPCGASMVIEAVLGPE
EEECCCCEEEEEECCCCCCEEEHHHHHHHHCCCEEECCCCCEECCCCCHHHHHHHHHCCC
RRSEGPFVDLLGLYDNVRSEPELKVESIYVNKVYEPVLHAILPGGTEHKLFMGFPREASI
CCCCCCEEEEHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
YDAVRRVVPRVVKVRLTPGSGMWLHAVISIEKQHDGDGKNAGLAALAGHPSLKHVVVVDA
HHHHHHHHHHEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEC
DIDPDDPQQVEWAIATRLQADRGIVIVSHARGSTLDPSAVDGLTAKLIVDATVPIGERSR
CCCCCCCHHHHHHHHHHEECCCCEEEEEECCCCCCCCHHHCCCEEEEEEEEECCCCCCCC
YTRPIIPGS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]