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The map label for this gene is dpa [H]

Identifier: 124028446

GI number: 124028446

Start: 1605002

End: 1605940

Strand: Direct

Name: dpa [H]

Synonym: Hbut_1602

Alternate gene names: 124028446

Gene position: 1605002-1605940 (Clockwise)

Preceding gene: 124028445

Following gene: 124028447

Centisome position: 96.27

GC content: 52.08

Gene sequence:

>939_bases
ATGGTGTTCAACAAGCTTAAGGGTGTGCTGAAAAAGTTTGTTGATAGTGTTGTTGAAGTCGCTGTCACGAGAGAGCTTAG
GGAGGAGGATATAGCACCACTACTCGACGAGCTAGTTATAGAGCTAGCTGAGAGCGATGTGGCTCTCGAGGTTGCCGAGG
AGATAGCTAACCGTCTACGTGAAGAACTTATCGGCAGGAAGATTCCAAGGTTTAGCGATGTTAGGAGCCTTGTCGTGGAG
TCTCTGGAGAAGGCTATCGTTGACGTACTGAGCAGAGGTTATCAACCACTGGATTTGATTGCCGAGGCTAGATCTAGGAG
CCCCGGGAACCCTCTCCGCATACTATTCTTTGGCGTTAACGGCGTGGGCAAAACAACCACCATTGCGAAGTTTGCCTACA
TGTTTAAGCAGAACGGCATAACACCCGTCATAGCTGCTGCCGACACATATCGTGCAGGTGCACAAGAGCAACTACGCAGG
CACGCAGAAAAGCTCAGCGTACCATTCATTGGTGGCCGCTATGGCGCCGACCCTGCTTCAGTTGTCTACGATGCTATAGA
GTATGCTAGGGCCAGGGGGTACCGCGTCATACTGGCTGATACCGCTGGCCGCATGCACACAGACCGTGACCTCATGGAGG
AGCTAAGGAAGATAACAAGGGTAGCCAAGCCGGATTACCGTGCACTAGTCGTAGACGCGCTTACCGGCAACGATGCTGTG
GAGCAGGCACGCTTCTTCGACGAAGCTGTAGGAATAGACTTCATAATCTTGACGAAGGTTGACGCCGACGTTAAGGGTGG
GACTGCGCTAAGCGTAGCAGCCGTTACAGGCAAACCAATACTCTTCGTCGGCACTGGGCAGAAGTACGAGGATCTAGAGC
TCTTCGACCCCAAACGCTACACAGAGAAGATAATTGGGGAGCTGAAACAGAAGAGCTAG

Upstream 100 bases:

>100_bases
AACAATAACGTTACGTAGTAACATTATACAGCATCAGACTAGACATTGCCTATTCTTCCAAGGTTTATTTACCCACTATC
CTGCTGCATGGTGGGCTGCA

Downstream 100 bases:

>100_bases
ACCGGCCACCCGTAGGAATATCTGGGGCTAACCCCGCCTACTCCCTGGGGTCTACGGCAATGGCTAGCAAGGAGCGAGAA
AGCAGCGGCCCCCTAGGCTA

Product: Signal recognition particle GTPase

Products: NA

Alternate protein names: Docking protein; P41 [H]

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MVFNKLKGVLKKFVDSVVEVAVTRELREEDIAPLLDELVIELAESDVALEVAEEIANRLREELIGRKIPRFSDVRSLVVE
SLEKAIVDVLSRGYQPLDLIAEARSRSPGNPLRILFFGVNGVGKTTTIAKFAYMFKQNGITPVIAAADTYRAGAQEQLRR
HAEKLSVPFIGGRYGADPASVVYDAIEYARARGYRVILADTAGRMHTDRDLMEELRKITRVAKPDYRALVVDALTGNDAV
EQARFFDEAVGIDFIILTKVDADVKGGTALSVAAVTGKPILFVGTGQKYEDLELFDPKRYTEKIIGELKQKS

Sequences:

>Translated_312_residues
MVFNKLKGVLKKFVDSVVEVAVTRELREEDIAPLLDELVIELAESDVALEVAEEIANRLREELIGRKIPRFSDVRSLVVE
SLEKAIVDVLSRGYQPLDLIAEARSRSPGNPLRILFFGVNGVGKTTTIAKFAYMFKQNGITPVIAAADTYRAGAQEQLRR
HAEKLSVPFIGGRYGADPASVVYDAIEYARARGYRVILADTAGRMHTDRDLMEELRKITRVAKPDYRALVVDALTGNDAV
EQARFFDEAVGIDFIILTKVDADVKGGTALSVAAVTGKPILFVGTGQKYEDLELFDPKRYTEKIIGELKQKS
>Mature_312_residues
MVFNKLKGVLKKFVDSVVEVAVTRELREEDIAPLLDELVIELAESDVALEVAEEIANRLREELIGRKIPRFSDVRSLVVE
SLEKAIVDVLSRGYQPLDLIAEARSRSPGNPLRILFFGVNGVGKTTTIAKFAYMFKQNGITPVIAAADTYRAGAQEQLRR
HAEKLSVPFIGGRYGADPASVVYDAIEYARARGYRVILADTAGRMHTDRDLMEELRKITRVAKPDYRALVVDALTGNDAV
EQARFFDEAVGIDFIILTKVDADVKGGTALSVAAVTGKPILFVGTGQKYEDLELFDPKRYTEKIIGELKQKS

Specific function: Probably involved in the signal sequence recognition [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI295424842, Length=317, Percent_Identity=38.801261829653, Blast_Score=187, Evalue=7e-48,
Organism=Homo sapiens, GI23308697, Length=317, Percent_Identity=38.801261829653, Blast_Score=187, Evalue=9e-48,
Organism=Homo sapiens, GI4507215, Length=281, Percent_Identity=30.2491103202847, Blast_Score=161, Evalue=6e-40,
Organism=Homo sapiens, GI226371618, Length=232, Percent_Identity=33.1896551724138, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI89061728, Length=130, Percent_Identity=33.8461538461538, Blast_Score=93, Evalue=3e-19,
Organism=Escherichia coli, GI1789874, Length=266, Percent_Identity=41.3533834586466, Blast_Score=184, Evalue=9e-48,
Organism=Escherichia coli, GI1788963, Length=282, Percent_Identity=35.8156028368794, Blast_Score=178, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI193206261, Length=288, Percent_Identity=39.5833333333333, Blast_Score=175, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI17539958, Length=296, Percent_Identity=29.7297297297297, Blast_Score=173, Evalue=1e-43,
Organism=Saccharomyces cerevisiae, GI6325345, Length=304, Percent_Identity=31.9078947368421, Blast_Score=171, Evalue=1e-43,
Organism=Saccharomyces cerevisiae, GI6320498, Length=306, Percent_Identity=34.3137254901961, Blast_Score=170, Evalue=2e-43,
Organism=Drosophila melanogaster, GI24641198, Length=289, Percent_Identity=37.3702422145329, Blast_Score=178, Evalue=4e-45,
Organism=Drosophila melanogaster, GI17647949, Length=281, Percent_Identity=31.3167259786477, Blast_Score=166, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 34546; Mature: 34546

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFNKLKGVLKKFVDSVVEVAVTRELREEDIAPLLDELVIELAESDVALEVAEEIANRLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
EELIGRKIPRFSDVRSLVVESLEKAIVDVLSRGYQPLDLIAEARSRSPGNPLRILFFGVN
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECC
GVGKTTTIAKFAYMFKQNGITPVIAAADTYRAGAQEQLRRHAEKLSVPFIGGRYGADPAS
CCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
VVYDAIEYARARGYRVILADTAGRMHTDRDLMEELRKITRVAKPDYRALVVDALTGNDAV
HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
EQARFFDEAVGIDFIILTKVDADVKGGTALSVAAVTGKPILFVGTGQKYEDLELFDPKRY
HHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCHHH
TEKIIGELKQKS
HHHHHHHHHCCC
>Mature Secondary Structure
MVFNKLKGVLKKFVDSVVEVAVTRELREEDIAPLLDELVIELAESDVALEVAEEIANRLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
EELIGRKIPRFSDVRSLVVESLEKAIVDVLSRGYQPLDLIAEARSRSPGNPLRILFFGVN
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECC
GVGKTTTIAKFAYMFKQNGITPVIAAADTYRAGAQEQLRRHAEKLSVPFIGGRYGADPAS
CCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH
VVYDAIEYARARGYRVILADTAGRMHTDRDLMEELRKITRVAKPDYRALVVDALTGNDAV
HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHH
EQARFFDEAVGIDFIILTKVDADVKGGTALSVAAVTGKPILFVGTGQKYEDLELFDPKRY
HHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCHHH
TEKIIGELKQKS
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658539; 8935656 [H]