Click here to switch to the map view.

The map label for this gene is pfdA

Identifier: 124028445

GI number: 124028445

Start: 1604445

End: 1604909

Strand: Direct

Name: pfdA

Synonym: Hbut_1601

Alternate gene names: 124028445

Gene position: 1604445-1604909 (Clockwise)

Preceding gene: 124028444

Following gene: 124028446

Centisome position: 96.24

GC content: 52.47

Gene sequence:

>465_bases
TTGAGCCAAGCAGGGCAGAGCAGCAGGACTATAACGCTCGAGGAGGCGTTGGAACAACTATCCCTCCTCGAGTCCCAACT
CAACCAGCTCCAGGCAACGATACGTGAGATAGAGGTTAGGATAGCACAGTTAACCGCTGTAGAGGACGCACTAGCAAGCC
TTGCCGAGGGTGCTGAGGACGCACTCATACCACTGGATGGAAGGGGTACTGTACTAGTGCCAGCATCGATAAAGAAGCTT
GAGAGGATACTTGTTCATGCCGGACTCAACGTGTTCGTAGAGGTTGACAGAGAGAAGGCGCTAGAGTATTTACGGGATGA
AAAGGCTGCTCTCTCCAAACTCTTGGACGCCTATAGCCGCGAGTATGCAAGACTTGCACAGTACTATTCCGCATTACGCT
CAGCAATAGAGTCGGCGCTGCAAGCTGCTCCACCACAGGCCAAGAGCCAACAGAGCCAACAATAA

Upstream 100 bases:

>100_bases
GGTATCACGTCAAGATAGAGCGTGTAGTCGAGGTGCCACCGGAGGAGGTGCCCGACCGCACACTACTAGTGCTAGCAAGT
CTTACAAGGTGGGTTAAGCC

Downstream 100 bases:

>100_bases
CGTTACGTAGTAACATTATACAGCATCAGACTAGACATTGCCTATTCTTCCAAGGTTTATTTACCCACTATCCTGCTGCA
TGGTGGGCTGCAATGGTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: GimC subunit alpha

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSQAGQSSRTITLEEALEQLSLLESQLNQLQATIREIEVRIAQLTAVEDALASLAEGAEDALIPLDGRGTVLVPASIKKL
ERILVHAGLNVFVEVDREKALEYLRDEKAALSKLLDAYSREYARLAQYYSALRSAIESALQAAPPQAKSQQSQQ

Sequences:

>Translated_154_residues
MSQAGQSSRTITLEEALEQLSLLESQLNQLQATIREIEVRIAQLTAVEDALASLAEGAEDALIPLDGRGTVLVPASIKKL
ERILVHAGLNVFVEVDREKALEYLRDEKAALSKLLDAYSREYARLAQYYSALRSAIESALQAAPPQAKSQQSQQ
>Mature_153_residues
SQAGQSSRTITLEEALEQLSLLESQLNQLQATIREIEVRIAQLTAVEDALASLAEGAEDALIPLDGRGTVLVPASIKKLE
RILVHAGLNVFVEVDREKALEYLRDEKAALSKLLDAYSREYARLAQYYSALRSAIESALQAAPPQAKSQQSQQ

Specific function: Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding

COG id: COG1730

COG function: function code O; Predicted prefoldin, molecular chaperone implicated in de novo protein folding

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prefoldin alpha subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PFDA_HYPBU (A2BN59)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013765.1
- ProteinModelPortal:   A2BN59
- SMR:   A2BN59
- STRING:   A2BN59
- GeneID:   4782502
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1601
- BioCyc:   HBUT415426:HBUT_1601-MONOMER
- HAMAP:   MF_00308
- InterPro:   IPR011599
- InterPro:   IPR009053
- InterPro:   IPR004127
- TIGRFAMs:   TIGR00293

Pfam domain/function: PF02996 Prefoldin; SSF46579 Prefoldin

EC number: NA

Molecular weight: Translated: 16877; Mature: 16746

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQAGQSSRTITLEEALEQLSLLESQLNQLQATIREIEVRIAQLTAVEDALASLAEGAED
CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ALIPLDGRGTVLVPASIKKLERILVHAGLNVFVEVDREKALEYLRDEKAALSKLLDAYSR
CEEEECCCCCEEECHHHHHHHHHHHHHCCHHEEEECHHHHHHHHHHHHHHHHHHHHHHHH
EYARLAQYYSALRSAIESALQAAPPQAKSQQSQQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SQAGQSSRTITLEEALEQLSLLESQLNQLQATIREIEVRIAQLTAVEDALASLAEGAED
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ALIPLDGRGTVLVPASIKKLERILVHAGLNVFVEVDREKALEYLRDEKAALSKLLDAYSR
CEEEECCCCCEEECHHHHHHHHHHHHHCCHHEEEECHHHHHHHHHHHHHHHHHHHHHHHH
EYARLAQYYSALRSAIESALQAAPPQAKSQQSQQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA