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The map label for this gene is rpl39e

Identifier: 124028441

GI number: 124028441

Start: 1602885

End: 1603040

Strand: Direct

Name: rpl39e

Synonym: Hbut_1597

Alternate gene names: 124028441

Gene position: 1602885-1603040 (Clockwise)

Preceding gene: 124028440

Following gene: 124028442

Centisome position: 96.14

GC content: 49.36

Gene sequence:

>156_bases
ATGGCACACTTTAAGCCTCTGGGTAAAAAGCTACGTCTAGCTAAGGCGCTCAAACAGAACCGCTCTGTACCCATATGGGT
TATAATAAAGACCAACCGAAGGTTCCGTGACCACCCGAAGCGTAGGCATTGGAGGAGAACCAAGCTCAAGGCTTAG

Upstream 100 bases:

>100_bases
CGTATCCTCGAGGCAATATACGAGAGGACACACCGAGAGACACGTATAAGGATTAAAAGAAAGTAGCCCATGTCAACCGC
AGCGGGGGGCCGAAGAGGCT

Downstream 100 bases:

>100_bases
CGGGGTGTAAGCCATGCCTAAGGATAAGAAGGAGGCAATTTACACGATACCTCTCTCAAGAGTATACTGGGGTAGACGTA
CAAACCGTGCAGCACGCGCC

Product: 50S ribosomal protein L39e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MAHFKPLGKKLRLAKALKQNRSVPIWVIIKTNRRFRDHPKRRHWRRTKLKA

Sequences:

>Translated_51_residues
MAHFKPLGKKLRLAKALKQNRSVPIWVIIKTNRRFRDHPKRRHWRRTKLKA
>Mature_50_residues
AHFKPLGKKLRLAKALKQNRSVPIWVIIKTNRRFRDHPKRRHWRRTKLKA

Specific function: Unknown

COG id: COG2167

COG function: function code J; Ribosomal protein L39E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L39e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL39_HYPBU (A2BN55)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013761.1
- ProteinModelPortal:   A2BN55
- SMR:   A2BN55
- STRING:   A2BN55
- GeneID:   4781661
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1597
- eggNOG:   arNOG13954
- OMA:   LTHPKRR
- ProtClustDB:   PRK01242
- BioCyc:   HBUT415426:HBUT_1597-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00629
- InterPro:   IPR000077
- InterPro:   IPR020083
- Gene3D:   G3DSA:1.10.1620.10
- PANTHER:   PTHR19970

Pfam domain/function: PF00832 Ribosomal_L39; SSF48662 Ribosomal_L39

EC number: NA

Molecular weight: Translated: 6284; Mature: 6153

Theoretical pI: Translated: 13.06; Mature: 13.06

Prosite motif: PS00051 RIBOSOMAL_L39E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHFKPLGKKLRLAKALKQNRSVPIWVIIKTNRRFRDHPKRRHWRRTKLKA
CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
AHFKPLGKKLRLAKALKQNRSVPIWVIIKTNRRFRDHPKRRHWRRTKLKA
CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA