Click here to switch to the map view.

The map label for this gene is rpoH

Identifier: 124028418

GI number: 124028418

Start: 1580473

End: 1580724

Strand: Direct

Name: rpoH

Synonym: Hbut_1572

Alternate gene names: 124028418

Gene position: 1580473-1580724 (Clockwise)

Preceding gene: 124028417

Following gene: 124028419

Centisome position: 94.8

GC content: 56.75

Gene sequence:

>252_bases
ATGGCCCGGCAGAAGAAGAAGTTCAACATTCTAGAGCATGAACTCGTACCCAAGCACGAGGTTGTACCACCAGAGGAGGC
AGCACGCATTATCCGAGAGCTTGGCGTACGTCCAGAGCAGCTCCCCTGGCTACGGGCTACAGACCCCGTAGCCAGGGCTA
TCGGTGCAAAGCCTGGGGACATTGTCCGCATTTACCGTAAAAGCCCGACAGCGGGTGAGGTAGTAGTCTACCGCTACGTT
GTCGGCTACTAG

Upstream 100 bases:

>100_bases
CTACGCCGCTACTCCTGGATGAACAAGAAGGTAAACCGTATACGCATAAGGTAGCCCTCCCTTATACACTGACACCGTAC
TTATTTAGGGGGCTCAGTAC

Downstream 100 bases:

>100_bases
GAATGAGGGGGTGAGGAAGGGTTGAGCCAGCAACAGTTTCCAACAATGGACGACCGCTGGCTTGTAATGAAGGCGTTTAT
AGAAGAGTATGGTCTGGTTA

Product: DNA-directed RNA polymerase subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MARQKKKFNILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGDIVRIYRKSPTAGEVVVYRYV
VGY

Sequences:

>Translated_83_residues
MARQKKKFNILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGDIVRIYRKSPTAGEVVVYRYV
VGY
>Mature_82_residues
ARQKKKFNILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGDIVRIYRKSPTAGEVVVYRYVV
GY

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family

Homologues:

Organism=Homo sapiens, GI14589951, Length=78, Percent_Identity=46.1538461538462, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17507947, Length=73, Percent_Identity=46.5753424657534, Blast_Score=69, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6319630, Length=73, Percent_Identity=39.7260273972603, Blast_Score=60, Evalue=8e-11,
Organism=Drosophila melanogaster, GI19922004, Length=73, Percent_Identity=43.8356164383562, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOH_HYPBU (A2BN32)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013738.1
- ProteinModelPortal:   A2BN32
- SMR:   A2BN32
- STRING:   A2BN32
- GeneID:   4782374
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1572
- eggNOG:   arNOG12569
- HOGENOM:   HBG496846
- OMA:   IKRKSPT
- ProtClustDB:   PRK09570
- BioCyc:   HBUT415426:HBUT_1572-MONOMER
- HAMAP:   MF_00025
- InterPro:   IPR020609
- InterPro:   IPR000783
- InterPro:   IPR020608
- Gene3D:   G3DSA:3.90.940.20
- ProDom:   PD005155

Pfam domain/function: PF01191 RNA_pol_Rpb5_C; SSF55287 RNApol_RPB5_like

EC number: =2.7.7.6

Molecular weight: Translated: 9473; Mature: 9342

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS01110 RNA_POL_H_23KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQKKKFNILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGD
CCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
IVRIYRKSPTAGEVVVYRYVVGY
EEEEEECCCCCCCEEEEEEECCC
>Mature Secondary Structure 
ARQKKKFNILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGD
CCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
IVRIYRKSPTAGEVVVYRYVVGY
EEEEEECCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA