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The map label for this gene is ythA [H]

Identifier: 124028332

GI number: 124028332

Start: 1492779

End: 1494458

Strand: Reverse

Name: ythA [H]

Synonym: Hbut_1483

Alternate gene names: 124028332

Gene position: 1494458-1492779 (Counterclockwise)

Preceding gene: 124028333

Following gene: 124028331

Centisome position: 89.64

GC content: 47.08

Gene sequence:

>1680_bases
TTGGCCGACCTATTAGGTCAATGGGGTCAATATCCAGCGTTTTCCGACAGGGTCCTATCACTCATAGGTATTGAGGCCCA
CTGGGCGATTCTACAATACGTCGTCGGCCTCAGCTTCCTATCATTTATAGCATACCTAATATATGCCAAAACCAATGATA
AAAAATGGGAGAGACTAGCGTATACATTGTTCAAGGGATTCGTAATAGTATTCGCAGTAGGAGCTGCTACAGGCACGGCA
AGCGAGTTCGGCCTTGTCCTACTTTGGCCAAACCTAACAGAAGCAGCTGGTAGATACATATACTTCCCACTGTACGCTGA
GGTATTCGCCTTCCTACTAGAAGTCGTATTCATATACTTAACATACTATGGATGGAAGAAATTCGGTAAAAGCGCCATGG
TCGTACTGCTATTCCTATCATTCATAGGGCCATGGTACAGTGCTGCAATGATCGTCTCCGTAAACAGCTATATGGTAGCC
CCTACTGGCATAGTGCCTGCCTATGATCCCAACACGGGTGCATGGCTATACGATCAAGGTTATCCAAAGATGACTCTTGT
CGTACCCAGCAATTTAGTCGAGGCACTAAACGTCACAGCACTACAGGCCGCTGGAATGACTGTCAAGGATACATTGAGCG
ACGCCGTAGTAGTAGAGATGCCGGTAAAGATAGTTCAACGATTAGTCTATGAGGCTTGGGCAGGCTATACAGTTAAAGAC
AGCATACTGGCACTGGTTGCAAACAAAGACTACGTTCAGGCCCACCCAGACATCCTAAACGTCCCCGTTAAAGACATCGT
GGACAAGATACTTGTCAAAACAATAGAGACTGTCGGAGTAACAACGGTCACCTTCAAGAGCCCGGTCTACCTAGCTTCAA
TACTACACGTTATAGGGGCGGCATTAACAGTAAGCTCCTTCACAATAATGGCCGCGTATGCAATGAGGATAAAGAGCTAT
GGCAAATCACCCAAAGAGTACAAAGATTACGTCAATGCTGCCTTCAAGTTTGCAGCTGTATCAGCACTCGTTACAATAGC
AATACAGGGCTTCGTATTCGGCCACGAGATGGGTACATCAATAGCCCATTATAACCCAGAGAAATTCGCTGCGATGGAGG
CCACCACCGACCAGATAACACCCGTCACGAAAATATTACCAGGCGGCGAGAAATTAGTAGCGCTCCTAGCTTACGGAGAT
CCCAATGCTCCACTACCCAACTATGATAAGATTCCATCAGATTACTGCTTCTTCCCAGCAACGCTTCAGGAGGACGCAGC
GAGAATCGGCTCCTGTAAACCACCACTAATAATACACTACCTATACTATGCCAAGACCGGTCTTGGAATACTCATGGGAC
TATACGCCCTAGCAATAGTCTTCTACCTATGGAGGACTAAGGATCCGGAAAAAACTCCTAGATGGCTACTGTCGGTAGCA
CCGCTCTCGATAATAATCATACAGTTCGTCAGCTTCCTAGGATGGGCAGTAAGAGAAATAGGGAGGAAGCCATGGACGAT
CTATGGAGTAATGACGCCCGATGTAGCCCACACAGTCAACCCGCCAAGCGTCGGTGCCGTGACACTAGTGGCAATATTCT
TCCTAGCAATACTAGCAGCACTAGGATACAGCGTCTACAGATTCCTATGGCTACCAGGTAAACCAGAGGAGGTGAAATAA

Upstream 100 bases:

>100_bases
TCTTCTTCGAAATTACCACTTCTAAACGAAATTCTTTTATTTGAGCTTGTGTTATGAACTAAAAACAGAACATTGTAATA
ACTAGTTGATGGGTGAGGTA

Downstream 100 bases:

>100_bases
CATGTTATGGAGCATATTCTGGCTAGCATTAGTATTCGCGTTCCACATAGTAATGGTTAATCTAGGCATATTCCTAGCAC
TTTATGTGCCATACCTAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MADLLGQWGQYPAFSDRVLSLIGIEAHWAILQYVVGLSFLSFIAYLIYAKTNDKKWERLAYTLFKGFVIVFAVGAATGTA
SEFGLVLLWPNLTEAAGRYIYFPLYAEVFAFLLEVVFIYLTYYGWKKFGKSAMVVLLFLSFIGPWYSAAMIVSVNSYMVA
PTGIVPAYDPNTGAWLYDQGYPKMTLVVPSNLVEALNVTALQAAGMTVKDTLSDAVVVEMPVKIVQRLVYEAWAGYTVKD
SILALVANKDYVQAHPDILNVPVKDIVDKILVKTIETVGVTTVTFKSPVYLASILHVIGAALTVSSFTIMAAYAMRIKSY
GKSPKEYKDYVNAAFKFAAVSALVTIAIQGFVFGHEMGTSIAHYNPEKFAAMEATTDQITPVTKILPGGEKLVALLAYGD
PNAPLPNYDKIPSDYCFFPATLQEDAARIGSCKPPLIIHYLYYAKTGLGILMGLYALAIVFYLWRTKDPEKTPRWLLSVA
PLSIIIIQFVSFLGWAVREIGRKPWTIYGVMTPDVAHTVNPPSVGAVTLVAIFFLAILAALGYSVYRFLWLPGKPEEVK

Sequences:

>Translated_559_residues
MADLLGQWGQYPAFSDRVLSLIGIEAHWAILQYVVGLSFLSFIAYLIYAKTNDKKWERLAYTLFKGFVIVFAVGAATGTA
SEFGLVLLWPNLTEAAGRYIYFPLYAEVFAFLLEVVFIYLTYYGWKKFGKSAMVVLLFLSFIGPWYSAAMIVSVNSYMVA
PTGIVPAYDPNTGAWLYDQGYPKMTLVVPSNLVEALNVTALQAAGMTVKDTLSDAVVVEMPVKIVQRLVYEAWAGYTVKD
SILALVANKDYVQAHPDILNVPVKDIVDKILVKTIETVGVTTVTFKSPVYLASILHVIGAALTVSSFTIMAAYAMRIKSY
GKSPKEYKDYVNAAFKFAAVSALVTIAIQGFVFGHEMGTSIAHYNPEKFAAMEATTDQITPVTKILPGGEKLVALLAYGD
PNAPLPNYDKIPSDYCFFPATLQEDAARIGSCKPPLIIHYLYYAKTGLGILMGLYALAIVFYLWRTKDPEKTPRWLLSVA
PLSIIIIQFVSFLGWAVREIGRKPWTIYGVMTPDVAHTVNPPSVGAVTLVAIFFLAILAALGYSVYRFLWLPGKPEEVK
>Mature_558_residues
ADLLGQWGQYPAFSDRVLSLIGIEAHWAILQYVVGLSFLSFIAYLIYAKTNDKKWERLAYTLFKGFVIVFAVGAATGTAS
EFGLVLLWPNLTEAAGRYIYFPLYAEVFAFLLEVVFIYLTYYGWKKFGKSAMVVLLFLSFIGPWYSAAMIVSVNSYMVAP
TGIVPAYDPNTGAWLYDQGYPKMTLVVPSNLVEALNVTALQAAGMTVKDTLSDAVVVEMPVKIVQRLVYEAWAGYTVKDS
ILALVANKDYVQAHPDILNVPVKDIVDKILVKTIETVGVTTVTFKSPVYLASILHVIGAALTVSSFTIMAAYAMRIKSYG
KSPKEYKDYVNAAFKFAAVSALVTIAIQGFVFGHEMGTSIAHYNPEKFAAMEATTDQITPVTKILPGGEKLVALLAYGDP
NAPLPNYDKIPSDYCFFPATLQEDAARIGSCKPPLIIHYLYYAKTGLGILMGLYALAIVFYLWRTKDPEKTPRWLLSVAP
LSIIIIQFVSFLGWAVREIGRKPWTIYGVMTPDVAHTVNPPSVGAVTLVAIFFLAILAALGYSVYRFLWLPGKPEEVK

Specific function: Probable cytochrome [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 61686; Mature: 61555

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLLGQWGQYPAFSDRVLSLIGIEAHWAILQYVVGLSFLSFIAYLIYAKTNDKKWERLA
CCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
YTLFKGFVIVFAVGAATGTASEFGLVLLWPNLTEAAGRYIYFPLYAEVFAFLLEVVFIYL
HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHCCCEEEEHHHHHHHHHHHHHHHHHH
TYYGWKKFGKSAMVVLLFLSFIGPWYSAAMIVSVNSYMVAPTGIVPAYDPNTGAWLYDQG
HHHHHHHHCHHHHHHHHHHHHHCHHHHHEEEEEECCEEEECCCCCCCCCCCCCCEEEECC
YPKMTLVVPSNLVEALNVTALQAAGMTVKDTLSDAVVVEMPVKIVQRLVYEAWAGYTVKD
CCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHCCCEEEHHHHHHHHHHHHHHHCCCEEHH
SILALVANKDYVQAHPDILNVPVKDIVDKILVKTIETVGVTTVTFKSPVYLASILHVIGA
HHHEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH
ALTVSSFTIMAAYAMRIKSYGKSPKEYKDYVNAAFKFAAVSALVTIAIQGFVFGHEMGTS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IAHYNPEKFAAMEATTDQITPVTKILPGGEKLVALLAYGDPNAPLPNYDKIPSDYCFFPA
HHCCCHHHHHHHHCCCCCCCCHHHHCCCCHHEEEEEEECCCCCCCCCCCCCCCCCEECCC
TLQEDAARIGSCKPPLIIHYLYYAKTGLGILMGLYALAIVFYLWRTKDPEKTPRWLLSVA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
PLSIIIIQFVSFLGWAVREIGRKPWTIYGVMTPDVAHTVNPPSVGAVTLVAIFFLAILAA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHH
LGYSVYRFLWLPGKPEEVK
HHHHHHHEEECCCCCCCCC
>Mature Secondary Structure 
ADLLGQWGQYPAFSDRVLSLIGIEAHWAILQYVVGLSFLSFIAYLIYAKTNDKKWERLA
CCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
YTLFKGFVIVFAVGAATGTASEFGLVLLWPNLTEAAGRYIYFPLYAEVFAFLLEVVFIYL
HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHCCCEEEEHHHHHHHHHHHHHHHHHH
TYYGWKKFGKSAMVVLLFLSFIGPWYSAAMIVSVNSYMVAPTGIVPAYDPNTGAWLYDQG
HHHHHHHHCHHHHHHHHHHHHHCHHHHHEEEEEECCEEEECCCCCCCCCCCCCCEEEECC
YPKMTLVVPSNLVEALNVTALQAAGMTVKDTLSDAVVVEMPVKIVQRLVYEAWAGYTVKD
CCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHCCCEEEHHHHHHHHHHHHHHHCCCEEHH
SILALVANKDYVQAHPDILNVPVKDIVDKILVKTIETVGVTTVTFKSPVYLASILHVIGA
HHHEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH
ALTVSSFTIMAAYAMRIKSYGKSPKEYKDYVNAAFKFAAVSALVTIAIQGFVFGHEMGTS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IAHYNPEKFAAMEATTDQITPVTKILPGGEKLVALLAYGDPNAPLPNYDKIPSDYCFFPA
HHCCCHHHHHHHHCCCCCCCCHHHHCCCCHHEEEEEEECCCCCCCCCCCCCCCCCEECCC
TLQEDAARIGSCKPPLIIHYLYYAKTGLGILMGLYALAIVFYLWRTKDPEKTPRWLLSVA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
PLSIIIIQFVSFLGWAVREIGRKPWTIYGVMTPDVAHTVNPPSVGAVTLVAIFFLAILAA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHH
LGYSVYRFLWLPGKPEEVK
HHHHHHHEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]