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The map label for this gene is ychE [C]

Identifier: 124028124

GI number: 124028124

Start: 1271100

End: 1271717

Strand: Reverse

Name: ychE [C]

Synonym: Hbut_1267

Alternate gene names: 124028124

Gene position: 1271717-1271100 (Counterclockwise)

Preceding gene: 124028125

Following gene: 124028122

Centisome position: 76.28

GC content: 47.9

Gene sequence:

>618_bases
ATGCAGCCAAGCGGCGGGGCTAACACTGAAACACTAGTACAGTCTATAGTCCTCCTATTCATAGCAATAGACCCTATCGG
CAACGCACCGCTATTCTATAGTCTAACAGCCAGGCTTGACGCCAGGCTAAGGGTGCGAATAGTTAAGCAGAGCTGCATAG
TAGCTACCAGCATATTGTTCGTATTTGCCCTCACAGGAAATACCGCTCTAAGCTATTTCGGGCTCACGTTAGCAGACTTC
CGCATAGCTGGCGGCATCGTACTCCTCATCTACGGTATAGCTGGAATCCTTGGCTGGACAGAAGCCGAAATGATAAGGCA
CCCGGAAGAGGTTGAGTCAATAGCAATAGTGCCGCTTGCAACACCGTTGCTAGCAGGTCCAGCTGCTATAGCAACTGTTC
TCTACGTAAGGGCCGTGCATGGGCTAACATATGCTCTGGCGAGCGTAACTGTAAATACTGCTATAACATTCCTGATGCTC
TATCACAGCCAGAAGCTAATGAACTTATTAGGGAAAAATGGAGCGATAGCACTGTCGAAGATAATGGCTATGCTTCTAGC
AGCAATAGCTGTGGCAATGATTAGAACTGGCATACAAGACATACTGGCAACTACATAG

Upstream 100 bases:

>100_bases
AGTAGTGGCTGCGATCTGGACGACCGGCAATGTATTGAAAACTGTGTTGAGGAGTGCAGAAAAAAGCTTATAGAAAGGAT
TGTGGAGGCACTGGAGCGCT

Downstream 100 bases:

>100_bases
TGCCACTGCTAGCCTCTGCCGCCAACGGTACACGGTACAGTTTGTCGCCAACCCTAACGATTACATTCAACTCCTCGATG
TTCTCAACTGTTCCAAAGTA

Product: transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MQPSGGANTETLVQSIVLLFIAIDPIGNAPLFYSLTARLDARLRVRIVKQSCIVATSILFVFALTGNTALSYFGLTLADF
RIAGGIVLLIYGIAGILGWTEAEMIRHPEEVESIAIVPLATPLLAGPAAIATVLYVRAVHGLTYALASVTVNTAITFLML
YHSQKLMNLLGKNGAIALSKIMAMLLAAIAVAMIRTGIQDILATT

Sequences:

>Translated_205_residues
MQPSGGANTETLVQSIVLLFIAIDPIGNAPLFYSLTARLDARLRVRIVKQSCIVATSILFVFALTGNTALSYFGLTLADF
RIAGGIVLLIYGIAGILGWTEAEMIRHPEEVESIAIVPLATPLLAGPAAIATVLYVRAVHGLTYALASVTVNTAITFLML
YHSQKLMNLLGKNGAIALSKIMAMLLAAIAVAMIRTGIQDILATT
>Mature_205_residues
MQPSGGANTETLVQSIVLLFIAIDPIGNAPLFYSLTARLDARLRVRIVKQSCIVATSILFVFALTGNTALSYFGLTLADF
RIAGGIVLLIYGIAGILGWTEAEMIRHPEEVESIAIVPLATPLLAGPAAIATVLYVRAVHGLTYALASVTVNTAITFLML
YHSQKLMNLLGKNGAIALSKIMAMLLAAIAVAMIRTGIQDILATT

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=193, Percent_Identity=30.5699481865285, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789842, Length=192, Percent_Identity=28.6458333333333, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787809, Length=200, Percent_Identity=28, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 21711; Mature: 21711

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPSGGANTETLVQSIVLLFIAIDPIGNAPLFYSLTARLDARLRVRIVKQSCIVATSILF
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFALTGNTALSYFGLTLADFRIAGGIVLLIYGIAGILGWTEAEMIRHPEEVESIAIVPLA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHEEEHHHH
TPLLAGPAAIATVLYVRAVHGLTYALASVTVNTAITFLMLYHSQKLMNLLGKNGAIALSK
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IMAMLLAAIAVAMIRTGIQDILATT
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQPSGGANTETLVQSIVLLFIAIDPIGNAPLFYSLTARLDARLRVRIVKQSCIVATSILF
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFALTGNTALSYFGLTLADFRIAGGIVLLIYGIAGILGWTEAEMIRHPEEVESIAIVPLA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHEEEHHHH
TPLLAGPAAIATVLYVRAVHGLTYALASVTVNTAITFLMLYHSQKLMNLLGKNGAIALSK
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IMAMLLAAIAVAMIRTGIQDILATT
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]