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The map label for this gene is 124028093

Identifier: 124028093

GI number: 124028093

Start: 1240794

End: 1241537

Strand: Direct

Name: 124028093

Synonym: Hbut_1236

Alternate gene names: NA

Gene position: 1240794-1241537 (Clockwise)

Preceding gene: 124028090

Following gene: 124028094

Centisome position: 74.43

GC content: 50.27

Gene sequence:

>744_bases
TTGGGGCCAGCAGTTTTGAGAGGCTATTGTGCTAGGTGTGGTAAGCCGCTTACACCGGGAGATAGTGTTGGACCATTCTG
CCTCGACTGTTACGTGGAGATGTTTAAACTGCTCTGTGTACCTGAACGAGTGAGATTTGACTATTGTAAATACTGTGGGG
CCTACCGGATTGGCCACCGCTGGCAGAGTGGCGGCGAGCTGGAAGAGGCTGTTCAACGTTTTGTAGAAGAGGTTGCTGGA
GGCGTTAAGCCGTGCAGGCCTGAGGTTAGGGGCTTTAGTGTTGAGGGCGTGGAGCCCCTGACAAAGCCGTCCTGGAGGAC
AATATACGCTATACGCTACAGCATACAAGTACAAGGTGTGGACAAGCCTATAAGCCAGACGTACCGTGTTGAGGTTAGAG
CTAGCCCGACAATATGTCCTACATGCAAGGATGTTAGGGGTGGAGAGTACAACGTACTGCTCCAGGTGCGCGGGATAAAG
CCTGCCGAGTTAGCTAGACTCCTCGGCCCATTGCTCGACTCTAGCGAGCAAATACAGAACTCCATAGTTGACATAGTAGA
GTATAATAATGGTGTTGACTTCCTATTGCTTGATAGGGGTAGTGCAGCTAAAATAATTAAGGAAATCAAGAAGAAGTACA
TAGTGGTTACCCGTACAACTGGCGAGGATGTCGGCATAACATCTACTGGGCATATGAGGAGGCGTACTGTGATAGCCGTT
AGGGTGAGGAGGCCACGGTTATGA

Upstream 100 bases:

>100_bases
ATCCCAAAACCTTGAGTAGTTAGAGGTCTGGCCGGGTCTAACTCATCACCCTCTAGACCGTCCGGGATATTACGTGGGCT
CCGGTTAATAGGTTACAGCC

Downstream 100 bases:

>100_bases
GCGATATAATAGACTACGTACCCGAGGACGTGCTCGAGGAGATTGTTAGTGCTGAGAGCGAGCTAAAGCAGAAGAGGAAG
AGGTACAAGCCATACCCCTC

Product: nonsense mediated mRNA decay

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MGPAVLRGYCARCGKPLTPGDSVGPFCLDCYVEMFKLLCVPERVRFDYCKYCGAYRIGHRWQSGGELEEAVQRFVEEVAG
GVKPCRPEVRGFSVEGVEPLTKPSWRTIYAIRYSIQVQGVDKPISQTYRVEVRASPTICPTCKDVRGGEYNVLLQVRGIK
PAELARLLGPLLDSSEQIQNSIVDIVEYNNGVDFLLLDRGSAAKIIKEIKKKYIVVTRTTGEDVGITSTGHMRRRTVIAV
RVRRPRL

Sequences:

>Translated_247_residues
MGPAVLRGYCARCGKPLTPGDSVGPFCLDCYVEMFKLLCVPERVRFDYCKYCGAYRIGHRWQSGGELEEAVQRFVEEVAG
GVKPCRPEVRGFSVEGVEPLTKPSWRTIYAIRYSIQVQGVDKPISQTYRVEVRASPTICPTCKDVRGGEYNVLLQVRGIK
PAELARLLGPLLDSSEQIQNSIVDIVEYNNGVDFLLLDRGSAAKIIKEIKKKYIVVTRTTGEDVGITSTGHMRRRTVIAV
RVRRPRL
>Mature_246_residues
GPAVLRGYCARCGKPLTPGDSVGPFCLDCYVEMFKLLCVPERVRFDYCKYCGAYRIGHRWQSGGELEEAVQRFVEEVAGG
VKPCRPEVRGFSVEGVEPLTKPSWRTIYAIRYSIQVQGVDKPISQTYRVEVRASPTICPTCKDVRGGEYNVLLQVRGIKP
AELARLLGPLLDSSEQIQNSIVDIVEYNNGVDFLLLDRGSAAKIIKEIKKKYIVVTRTTGEDVGITSTGHMRRRTVIAVR
VRRPRL

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27670; Mature: 27538

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPAVLRGYCARCGKPLTPGDSVGPFCLDCYVEMFKLLCVPERVRFDYCKYCGAYRIGHR
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHCCC
WQSGGELEEAVQRFVEEVAGGVKPCRPEVRGFSVEGVEPLTKPSWRTIYAIRYSIQVQGV
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECC
DKPISQTYRVEVRASPTICPTCKDVRGGEYNVLLQVRGIKPAELARLLGPLLDSSEQIQN
CCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHH
SIVDIVEYNNGVDFLLLDRGSAAKIIKEIKKKYIVVTRTTGEDVGITSTGHMRRRTVIAV
HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCHHEEEEEE
RVRRPRL
EECCCCC
>Mature Secondary Structure 
GPAVLRGYCARCGKPLTPGDSVGPFCLDCYVEMFKLLCVPERVRFDYCKYCGAYRIGHR
CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHCCC
WQSGGELEEAVQRFVEEVAGGVKPCRPEVRGFSVEGVEPLTKPSWRTIYAIRYSIQVQGV
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECC
DKPISQTYRVEVRASPTICPTCKDVRGGEYNVLLQVRGIKPAELARLLGPLLDSSEQIQN
CCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHH
SIVDIVEYNNGVDFLLLDRGSAAKIIKEIKKKYIVVTRTTGEDVGITSTGHMRRRTVIAV
HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCHHEEEEEE
RVRRPRL
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA