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The map label for this gene is 124028048

Identifier: 124028048

GI number: 124028048

Start: 1197346

End: 1198539

Strand: Direct

Name: 124028048

Synonym: Hbut_1189

Alternate gene names: NA

Gene position: 1197346-1198539 (Clockwise)

Preceding gene: 124028046

Following gene: 124028049

Centisome position: 71.82

GC content: 54.69

Gene sequence:

>1194_bases
GTGAAGCTGCCGGCGAGGCTGGAAGCGCTACAGAAGCTTAAGGCGAGGCTTGCTGAGACGCTGGAAGCTAAGCTCGAACC
TAGAGAACGCGAGACTGCAAGACGGGACCACCATGCATACCGTAGGCCCCGACCATGCGGCATGACTATTCATACCGGCG
TGGGCTGTAATGTGGGCTGCCTTTACTGCTACGTACCCGACATGGGATTTCCGCTTAAGCCTAGACCATACCCTCTCAAC
GGCCTACAGTTGGTTTACGCACTAGTCCTCAATCCATACTTTGTACCCGGCCCCGACGGTACTCTGCTAGCCTTCGGCTC
TGTAACCGAGCCACTGCTACCTGAAACCGTAGAGCAAACCATAGAGTATCTACGGCATACACGCAACTACCTTGGAAACC
CACAACAGCTTTCAACAAAACTCGTGGTTCAGGGAGAGCTTTTTGAGAGGTTCACCGAAGCACTAGAGCCGAGAGCAAAC
ATACTCATAACCATTACTACGATCTCGAAGGCGCATATCCTCGAGCCTAGAGCACCACCACCTATGGAGAGGTTTGAGTT
TGCACGCATGCTCGTAGAGCGAGGTATTAATGTAACTCTCTTCCTGCGCCCTATAATACCTGGTGTGACTGATAGGGAGC
TTGATGCGATACTATCGGCTGCAGCCAGGGCAGGAGTACGCACCATTGTTCCAGGCAGTCTCCGTGTAACACCAGGAATC
ATACGTAGGCTCCGAGCCTCTCGCATCGTCGACATGGCTGAGATCGAGAGGAGGCTGCCAAGGAAGCCCCGCAGTAGCCG
CGACCAGGTTGCGATACGCGAAACGGACCTGAAGAACCTCGTGGCCCGTAAAGCTAGGGCTTACGGGCTAAGGGTTCTGC
CCAGTAGCTGCTCAGCAAACATAAGGTCCCATGGCCTTGCATGCCATGCATGCATCTGGGGCCCTTGTGGTAATCCGAAA
TTACTCCCGCGACTCGTGGAGGAGGAGGTTGCTGAGGCTGCAGAGCTTCTGGGCTGCAGAAAGCCCCGTGTGAGGATCTC
TGGATTCCGGGTGCTAGTCCGGTGCGGCTCAAGGCTTGAGGCAAAGACGAGGAATATAATCCAGTCGTGGCTTGAAACTC
TGACAAAGAGGACTGTAACTGTTATAGCTCCCGGCCTACGTGGCAAGGGGTATGAGGCGTATGAGGAGGACTAG

Upstream 100 bases:

>100_bases
GTAGTTCTGCACAATAGTCTCACGCCCCTAGGCGTGGAGTGGTGGCCCTGGAAACCTGCATAAAACTCTAACGCTGAACT
CTTCCACGGGTGTAAAAGAG

Downstream 100 bases:

>100_bases
GCTGTGACAGGCGAGCAGGCTGGACGGTACCGTCTATTCAACCTAGTCATAGCCTATGAGCCTGGCACACATCGGGAGGA
TGATGCTATACGGCTTCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; DNA Photolyase; Radical SAM Family Protein; DNA Repair Photolyase; Radical SAM Superfamily Protein

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MKLPARLEALQKLKARLAETLEAKLEPRERETARRDHHAYRRPRPCGMTIHTGVGCNVGCLYCYVPDMGFPLKPRPYPLN
GLQLVYALVLNPYFVPGPDGTLLAFGSVTEPLLPETVEQTIEYLRHTRNYLGNPQQLSTKLVVQGELFERFTEALEPRAN
ILITITTISKAHILEPRAPPPMERFEFARMLVERGINVTLFLRPIIPGVTDRELDAILSAAARAGVRTIVPGSLRVTPGI
IRRLRASRIVDMAEIERRLPRKPRSSRDQVAIRETDLKNLVARKARAYGLRVLPSSCSANIRSHGLACHACIWGPCGNPK
LLPRLVEEEVAEAAELLGCRKPRVRISGFRVLVRCGSRLEAKTRNIIQSWLETLTKRTVTVIAPGLRGKGYEAYEED

Sequences:

>Translated_397_residues
MKLPARLEALQKLKARLAETLEAKLEPRERETARRDHHAYRRPRPCGMTIHTGVGCNVGCLYCYVPDMGFPLKPRPYPLN
GLQLVYALVLNPYFVPGPDGTLLAFGSVTEPLLPETVEQTIEYLRHTRNYLGNPQQLSTKLVVQGELFERFTEALEPRAN
ILITITTISKAHILEPRAPPPMERFEFARMLVERGINVTLFLRPIIPGVTDRELDAILSAAARAGVRTIVPGSLRVTPGI
IRRLRASRIVDMAEIERRLPRKPRSSRDQVAIRETDLKNLVARKARAYGLRVLPSSCSANIRSHGLACHACIWGPCGNPK
LLPRLVEEEVAEAAELLGCRKPRVRISGFRVLVRCGSRLEAKTRNIIQSWLETLTKRTVTVIAPGLRGKGYEAYEED
>Mature_397_residues
MKLPARLEALQKLKARLAETLEAKLEPRERETARRDHHAYRRPRPCGMTIHTGVGCNVGCLYCYVPDMGFPLKPRPYPLN
GLQLVYALVLNPYFVPGPDGTLLAFGSVTEPLLPETVEQTIEYLRHTRNYLGNPQQLSTKLVVQGELFERFTEALEPRAN
ILITITTISKAHILEPRAPPPMERFEFARMLVERGINVTLFLRPIIPGVTDRELDAILSAAARAGVRTIVPGSLRVTPGI
IRRLRASRIVDMAEIERRLPRKPRSSRDQVAIRETDLKNLVARKARAYGLRVLPSSCSANIRSHGLACHACIWGPCGNPK
LLPRLVEEEVAEAAELLGCRKPRVRISGFRVLVRCGSRLEAKTRNIIQSWLETLTKRTVTVIAPGLRGKGYEAYEED

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44565; Mature: 44565

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS00365 NIR_SIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPARLEALQKLKARLAETLEAKLEPRERETARRDHHAYRRPRPCGMTIHTGVGCNVGC
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCE
LYCYVPDMGFPLKPRPYPLNGLQLVYALVLNPYFVPGPDGTLLAFGSVTEPLLPETVEQT
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHH
IEYLRHTRNYLGNPQQLSTKLVVQGELFERFTEALEPRANILITITTISKAHILEPRAPP
HHHHHHHHHHCCCHHHHHHHHEEEHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCC
PMERFEFARMLVERGINVTLFLRPIIPGVTDRELDAILSAAARAGVRTIVPGSLRVTPGI
CHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHH
IRRLRASRIVDMAEIERRLPRKPRSSRDQVAIRETDLKNLVARKARAYGLRVLPSSCSAN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCEEEECCCCCCC
IRSHGLACHACIWGPCGNPKLLPRLVEEEVAEAAELLGCRKPRVRISGFRVLVRCGSRLE
HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCHHH
AKTRNIIQSWLETLTKRTVTVIAPGLRGKGYEAYEED
HHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKLPARLEALQKLKARLAETLEAKLEPRERETARRDHHAYRRPRPCGMTIHTGVGCNVGC
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCE
LYCYVPDMGFPLKPRPYPLNGLQLVYALVLNPYFVPGPDGTLLAFGSVTEPLLPETVEQT
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHH
IEYLRHTRNYLGNPQQLSTKLVVQGELFERFTEALEPRANILITITTISKAHILEPRAPP
HHHHHHHHHHCCCHHHHHHHHEEEHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCC
PMERFEFARMLVERGINVTLFLRPIIPGVTDRELDAILSAAARAGVRTIVPGSLRVTPGI
CHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHH
IRRLRASRIVDMAEIERRLPRKPRSSRDQVAIRETDLKNLVARKARAYGLRVLPSSCSAN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCEEEECCCCCCC
IRSHGLACHACIWGPCGNPKLLPRLVEEEVAEAAELLGCRKPRVRISGFRVLVRCGSRLE
HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCHHH
AKTRNIIQSWLETLTKRTVTVIAPGLRGKGYEAYEED
HHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA