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The map label for this gene is ydjH [C]

Identifier: 124027979

GI number: 124027979

Start: 1126695

End: 1127612

Strand: Direct

Name: ydjH [C]

Synonym: Hbut_1111

Alternate gene names: 124027979

Gene position: 1126695-1127612 (Clockwise)

Preceding gene: 124027974

Following gene: 124027980

Centisome position: 67.58

GC content: 55.77

Gene sequence:

>918_bases
ATGGTGGTAGTACACGCCGCTGTAGGCAACATCAACGTTGACATATACCTTGTCGTAGATGATCTGCCGAGGCCTGGCGA
GAACATTGTAGCACGTGAAGCCTACATAGGCCCTGGAGGCGCGGCTGCAAATTACTCTGTCGCGGTCAGGCTCTACGGGC
ATCAAGCAATACTTGTAGGACATACTAGTGTGTTCGCTGAGCGGCTCGGCATCCTTGACGCGCTTAGGGGGAAGGGAGTC
AGCCTCAGCCTTGTAAGGATACATGAAGGTGAGTTGCCGGGCATAGTAGTGGTGCTCGTTACACCCAACGGCGAACGTAC
CATGCTTGCGCTGCGCGGCGCCAATAACATGCTTACAGGTAACGAAGCTAGGTGTAGATGTGACGTGCTCCACGTGGCTA
GCCGTGACACCAACGTGCTTAGCAATGCTTCTACAGCCGCCTCGGCGGAGCTGGTGTCGTACGACCCAGGCTCCTCGGTT
GCACGTAGTGAAGGTGCAGGCATCATTGAGGCTGCTAGGAGGCATGTGTCAATACTCTATCTCAACAAGCTAGAGTACGA
GTACGTAACAGGTACAAGTGAGCTGGATAGCGTTGCAAGGCTCCTCGGTGGAAAGCTCCGCTACGTTGTCGTGAAATTGG
GTGCTGAGGGCGCGTTAGCTGCAACTCCCGATGGTGTATATCGTGTAGAGGCGTATAGGCATGGAGCTGTTGTTGATCCC
ACAGGGGCTGGTGACGTATTCGCCGCATACTTCAACTCCGCGCTGGCCGACGGCTACAGTGTTACCGAGGCTCTACAGTA
TGCTTCCGTAGCTGCGGGAGTGAAGGTTTCGAGACGTGGAGCCCAGAGTGCCCCTTCAAGGAGGGAGGTTGAAGAGATCA
TTGCTAGCCGTCCGCCGAGGGTCTGGAGGATCGCCTAG

Upstream 100 bases:

>100_bases
GTGCTACCTATCTCTAGCGCGGCTTGTTTTGGCTCTTTATTAACTCTGCCCGGTACCAGTCTATAGAGCGCGTAGTGTAC
CCAGGGGTGTGGGGCCGAGT

Downstream 100 bases:

>100_bases
GCTGCCAGAGCTTAGGCTTAACTGCAGACTATCCGATGACAGATACTGTGCGAAGTGCTGCTATAATACCGAGATGCCGC
TCACAAGGGAGGATATAGAG

Product: ribokinase

Products: ADP; D-ribose 5-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MVVVHAAVGNINVDIYLVVDDLPRPGENIVAREAYIGPGGAAANYSVAVRLYGHQAILVGHTSVFAERLGILDALRGKGV
SLSLVRIHEGELPGIVVVLVTPNGERTMLALRGANNMLTGNEARCRCDVLHVASRDTNVLSNASTAASAELVSYDPGSSV
ARSEGAGIIEAARRHVSILYLNKLEYEYVTGTSELDSVARLLGGKLRYVVVKLGAEGALAATPDGVYRVEAYRHGAVVDP
TGAGDVFAAYFNSALADGYSVTEALQYASVAAGVKVSRRGAQSAPSRREVEEIIASRPPRVWRIA

Sequences:

>Translated_305_residues
MVVVHAAVGNINVDIYLVVDDLPRPGENIVAREAYIGPGGAAANYSVAVRLYGHQAILVGHTSVFAERLGILDALRGKGV
SLSLVRIHEGELPGIVVVLVTPNGERTMLALRGANNMLTGNEARCRCDVLHVASRDTNVLSNASTAASAELVSYDPGSSV
ARSEGAGIIEAARRHVSILYLNKLEYEYVTGTSELDSVARLLGGKLRYVVVKLGAEGALAATPDGVYRVEAYRHGAVVDP
TGAGDVFAAYFNSALADGYSVTEALQYASVAAGVKVSRRGAQSAPSRREVEEIIASRPPRVWRIA
>Mature_305_residues
MVVVHAAVGNINVDIYLVVDDLPRPGENIVAREAYIGPGGAAANYSVAVRLYGHQAILVGHTSVFAERLGILDALRGKGV
SLSLVRIHEGELPGIVVVLVTPNGERTMLALRGANNMLTGNEARCRCDVLHVASRDTNVLSNASTAASAELVSYDPGSSV
ARSEGAGIIEAARRHVSILYLNKLEYEYVTGTSELDSVARLLGGKLRYVVVKLGAEGALAATPDGVYRVEAYRHGAVVDP
TGAGDVFAAYFNSALADGYSVTEALQYASVAAGVKVSRRGAQSAPSRREVEEIIASRPPRVWRIA

Specific function: Unknown

COG id: COG0524

COG function: function code G; Sugar kinases, ribokinase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbohydrate kinase pfkB family [H]

Homologues:

Organism=Escherichia coli, GI87081971, Length=308, Percent_Identity=26.6233766233766, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790193, Length=303, Percent_Identity=26.0726072607261, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011611
- InterPro:   IPR002173
- InterPro:   IPR002139 [H]

Pfam domain/function: PF00294 PfkB [H]

EC number: 2.7.1.15

Molecular weight: Translated: 32206; Mature: 32206

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVVHAAVGNINVDIYLVVDDLPRPGENIVAREAYIGPGGAAANYSVAVRLYGHQAILVG
CEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCEEEEEE
HTSVFAERLGILDALRGKGVSLSLVRIHEGELPGIVVVLVTPNGERTMLALRGANNMLTG
CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCC
NEARCRCDVLHVASRDTNVLSNASTAASAELVSYDPGSSVARSEGAGIIEAARRHVSILY
CCCCEEEEEEEECCCCCHHHCCCCCCCCEEEEEECCCCCCHHCCCCCHHHHHHHEEEEEE
LNKLEYEYVTGTSELDSVARLLGGKLRYVVVKLGAEGALAATPDGVYRVEAYRHGAVVDP
EECEEEEEECCCHHHHHHHHHHCCCEEEEEEEECCCCCEEECCCCEEEEEEECCCCEECC
TGAGDVFAAYFNSALADGYSVTEALQYASVAAGVKVSRRGAQSAPSRREVEEIIASRPPR
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCCC
VWRIA
EEEEC
>Mature Secondary Structure
MVVVHAAVGNINVDIYLVVDDLPRPGENIVAREAYIGPGGAAANYSVAVRLYGHQAILVG
CEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCEEEEEE
HTSVFAERLGILDALRGKGVSLSLVRIHEGELPGIVVVLVTPNGERTMLALRGANNMLTG
CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCC
NEARCRCDVLHVASRDTNVLSNASTAASAELVSYDPGSSVARSEGAGIIEAARRHVSILY
CCCCEEEEEEEECCCCCHHHCCCCCCCCEEEEEECCCCCCHHCCCCCHHHHHHHEEEEEE
LNKLEYEYVTGTSELDSVARLLGGKLRYVVVKLGAEGALAATPDGVYRVEAYRHGAVVDP
EECEEEEEECCCHHHHHHHHHHCCCEEEEEEEECCCCCEEECCCCEEEEEEECCCCEECC
TGAGDVFAAYFNSALADGYSVTEALQYASVAAGVKVSRRGAQSAPSRREVEEIIASRPPR
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCCC
VWRIA
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; D-ribose

Specific reaction: ATP + D-ribose = ADP + D-ribose 5-phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]