Click here to switch to the map view.

The map label for this gene is priB [H]

Identifier: 124027970

GI number: 124027970

Start: 1118389

End: 1119522

Strand: Direct

Name: priB [H]

Synonym: Hbut_1102

Alternate gene names: 124027970

Gene position: 1118389-1119522 (Clockwise)

Preceding gene: 124027968

Following gene: 124027971

Centisome position: 67.08

GC content: 53.44

Gene sequence:

>1134_bases
ATGACTGTAGCATATGCTAGAGCGGTTATTGTGAGGCTTGAGAGGTATCCGTTTCTAGCCGACGTGGATGCTGTTGCAAT
GAGGCGGTTTGGCCTAGGCGTTGTTGAGGTTGCACGTATCCGCCGGGACCTCGTGGAGCGAGGCGTTGATAGGCTCCTGG
AGGCTATTAGGAGGGGACGCCTCGGCGACAGTGTTGACCATGTTGAAGAGGAGGTTTTATCCTTCGCCTATGCTGCAATA
ATCGCCTACGCTACCGGCAACAAATGGCTCGTTTCGAGACTCGCTCTTGCCGAGGCTGAGAGGGCCTACAGCCTAGCCCA
GAGCGAGAACGATGAGACTATTGCACAGCTAGCAAGGCTTGTCGGCTTGGAGAGCCTAACCTATGGGAGGGGGTATCGTG
AACCCATAGCACTGCTAAGGGGGACAATAATATACCGAGTCTACCCCTACTCCATGAAGCTGATAGACTATCTGCGTGTT
GCCCGTAGGCTCCTAGGCGATGATGCATGGAAGCCTATAAACTTCCCAGTACTCCGCGGCATCATATTCCTCGATAAGAG
CCATGTACTGCGACTATTCAAGGAGGCTGCTACCGAGTATATCGAAGAGAAGGTGCGGAGCATAGGGGAGGCCTATGCAG
GCCAGCTAGTCGACGTTGTCTCGGAGTATGTGAAGAAGGTTGAGGAGAAGCTTTCTGAGCAGCGGCGCCCCCGCATGGTT
GGTAGCTCGCGGATAGAGGTTCCAAAGGGTGTCATTGTAGAGGAGGCATTACCCCCATGCATGAGGGATCTCATCGAAAG
GACGCGGAGAGGCGACAATCTCAGCCATCATGAGCGCTTCGCCCTAGCTACATTCATGCTAAACATAGGAGCCGAGATAG
ACTATGTTGTCGACTTGTTTAGGAATATGCCAGACTTCAACGAGAAAATTACGAGGTACCAGGTGGAACACCTTGCTGGA
CTACGCGGCTCCGGCAAGAAGTACCGTGTGTATAGCTGCGAAAAGATGAAGACCCTAGGCATTTGCAAAGCTGACTGTGG
AACAAGAAGCCCGATCCAGGCCTACTACCAGAGCCTACGCGGTCTCCTCGCACAGCGGCGGGGCAGACGCGGAAAAAGCA
ATAATGCTTCCTAA

Upstream 100 bases:

>100_bases
GCCAGGCTACGGGGCCTCCTCCTCATAAACAGTCTAGTGTTAATACCATGCCCTTATGGGGGTTTGGGGAGCCCCTAGTA
CTGGCGTCGGGTTGACGCCA

Downstream 100 bases:

>100_bases
GGTGCTGCCAAGGATTTACCCCTTATTCCTTTGCTGTAAAGGTTTAAAACCTTGCACAAGAGTACCCCTAGACCAGTTAT
GGAGGTAGACTAGTCTAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTVAYARAVIVRLERYPFLADVDAVAMRRFGLGVVEVARIRRDLVERGVDRLLEAIRRGRLGDSVDHVEEEVLSFAYAAI
IAYATGNKWLVSRLALAEAERAYSLAQSENDETIAQLARLVGLESLTYGRGYREPIALLRGTIIYRVYPYSMKLIDYLRV
ARRLLGDDAWKPINFPVLRGIIFLDKSHVLRLFKEAATEYIEEKVRSIGEAYAGQLVDVVSEYVKKVEEKLSEQRRPRMV
GSSRIEVPKGVIVEEALPPCMRDLIERTRRGDNLSHHERFALATFMLNIGAEIDYVVDLFRNMPDFNEKITRYQVEHLAG
LRGSGKKYRVYSCEKMKTLGICKADCGTRSPIQAYYQSLRGLLAQRRGRRGKSNNAS

Sequences:

>Translated_377_residues
MTVAYARAVIVRLERYPFLADVDAVAMRRFGLGVVEVARIRRDLVERGVDRLLEAIRRGRLGDSVDHVEEEVLSFAYAAI
IAYATGNKWLVSRLALAEAERAYSLAQSENDETIAQLARLVGLESLTYGRGYREPIALLRGTIIYRVYPYSMKLIDYLRV
ARRLLGDDAWKPINFPVLRGIIFLDKSHVLRLFKEAATEYIEEKVRSIGEAYAGQLVDVVSEYVKKVEEKLSEQRRPRMV
GSSRIEVPKGVIVEEALPPCMRDLIERTRRGDNLSHHERFALATFMLNIGAEIDYVVDLFRNMPDFNEKITRYQVEHLAG
LRGSGKKYRVYSCEKMKTLGICKADCGTRSPIQAYYQSLRGLLAQRRGRRGKSNNAS
>Mature_376_residues
TVAYARAVIVRLERYPFLADVDAVAMRRFGLGVVEVARIRRDLVERGVDRLLEAIRRGRLGDSVDHVEEEVLSFAYAAII
AYATGNKWLVSRLALAEAERAYSLAQSENDETIAQLARLVGLESLTYGRGYREPIALLRGTIIYRVYPYSMKLIDYLRVA
RRLLGDDAWKPINFPVLRGIIFLDKSHVLRLFKEAATEYIEEKVRSIGEAYAGQLVDVVSEYVKKVEEKLSEQRRPRMVG
SSRIEVPKGVIVEEALPPCMRDLIERTRRGDNLSHHERFALATFMLNIGAEIDYVVDLFRNMPDFNEKITRYQVEHLAGL
RGSGKKYRVYSCEKMKTLGICKADCGTRSPIQAYYQSLRGLLAQRRGRRGKSNNAS

Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]

COG id: COG2219

COG function: function code L; Eukaryotic-type DNA primase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic-type primase large subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007238 [H]

Pfam domain/function: PF04104 DNA_primase_lrg [H]

EC number: NA

Molecular weight: Translated: 42972; Mature: 42841

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVAYARAVIVRLERYPFLADVDAVAMRRFGLGVVEVARIRRDLVERGVDRLLEAIRRGR
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LGDSVDHVEEEVLSFAYAAIIAYATGNKWLVSRLALAEAERAYSLAQSENDETIAQLARL
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VGLESLTYGRGYREPIALLRGTIIYRVYPYSMKLIDYLRVARRLLGDDAWKPINFPVLRG
HHHHHHHCCCCCHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IIFLDKSHVLRLFKEAATEYIEEKVRSIGEAYAGQLVDVVSEYVKKVEEKLSEQRRPRMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GSSRIEVPKGVIVEEALPPCMRDLIERTRRGDNLSHHERFALATFMLNIGAEIDYVVDLF
CCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
RNMPDFNEKITRYQVEHLAGLRGSGKKYRVYSCEKMKTLGICKADCGTRSPIQAYYQSLR
HCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCEECCCCCCCHHHHHHHHHH
GLLAQRRGRRGKSNNAS
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TVAYARAVIVRLERYPFLADVDAVAMRRFGLGVVEVARIRRDLVERGVDRLLEAIRRGR
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LGDSVDHVEEEVLSFAYAAIIAYATGNKWLVSRLALAEAERAYSLAQSENDETIAQLARL
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VGLESLTYGRGYREPIALLRGTIIYRVYPYSMKLIDYLRVARRLLGDDAWKPINFPVLRG
HHHHHHHCCCCCHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IIFLDKSHVLRLFKEAATEYIEEKVRSIGEAYAGQLVDVVSEYVKKVEEKLSEQRRPRMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GSSRIEVPKGVIVEEALPPCMRDLIERTRRGDNLSHHERFALATFMLNIGAEIDYVVDLF
CCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
RNMPDFNEKITRYQVEHLAGLRGSGKKYRVYSCEKMKTLGICKADCGTRSPIQAYYQSLR
HCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCEECCCCCCCHHHHHHHHHH
GLLAQRRGRRGKSNNAS
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA