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The map label for this gene is albA2 [H]

Identifier: 124027850

GI number: 124027850

Start: 987021

End: 987290

Strand: Direct

Name: albA2 [H]

Synonym: Hbut_0977

Alternate gene names: 124027850

Gene position: 987021-987290 (Clockwise)

Preceding gene: 124027849

Following gene: 124027851

Centisome position: 59.2

GC content: 41.85

Gene sequence:

>270_bases
TTGGCTGTGGAGGAGAATGTTGTCGTTATTGGTAAGAAGCCTGTCACAGACTACGTTCTCGCAGCGATACTTTTGTTCAA
CGAGGGCTATGATGAAGTAATCATTAAGGGTCAGGGCAACAATGTGAGCAAGGCGGTTGATGTGTATAATGCATTAGCAA
ATAGGCTTCAAGATGGTATAGAGCTTGTAGATGTTAAGATCGATAGTGTTGAGCGTGGTAGGAGACTCGTACCAGTTATA
GAGATAAAGGTTCGAAGAAAGATAGTTTAA

Upstream 100 bases:

>100_bases
TCTGGGGCTGGCCTAGAAGGTTTTGTTAGGTGTTGCTTGAAGCGTATGTTTTAAAGCACTTTATGCGAGATAGGCAGCGC
GGAAGGGGGAGGTGTAGGGC

Downstream 100 bases:

>100_bases
AGATGTGCTAGGGCCACCAAGACTTCTTCCAAGCTTCACTCTATACTCCTGGACGACCTAGCTACGCCTCTAGTTGCCTC
TCCGCCACACACATATAACT

Product: DNA/RNA-binding protein Alba 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MAVEENVVVIGKKPVTDYVLAAILLFNEGYDEVIIKGQGNNVSKAVDVYNALANRLQDGIELVDVKIDSVERGRRLVPVI
EIKVRRKIV

Sequences:

>Translated_89_residues
MAVEENVVVIGKKPVTDYVLAAILLFNEGYDEVIIKGQGNNVSKAVDVYNALANRLQDGIELVDVKIDSVERGRRLVPVI
EIKVRRKIV
>Mature_88_residues
AVEENVVVIGKKPVTDYVLAAILLFNEGYDEVIIKGQGNNVSKAVDVYNALANRLQDGIELVDVKIDSVERGRRLVPVIE
IKVRRKIV

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013795
- InterPro:   IPR002775 [H]

Pfam domain/function: PF01918 Alba [H]

EC number: NA

Molecular weight: Translated: 9890; Mature: 9759

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVEENVVVIGKKPVTDYVLAAILLFNEGYDEVIIKGQGNNVSKAVDVYNALANRLQDGI
CCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
ELVDVKIDSVERGRRLVPVIEIKVRRKIV
EEEEEEECCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure 
AVEENVVVIGKKPVTDYVLAAILLFNEGYDEVIIKGQGNNVSKAVDVYNALANRLQDGI
CCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC
ELVDVKIDSVERGRRLVPVIEIKVRRKIV
EEEEEEECCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8972852 [H]