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The map label for this gene is deoC [H]

Identifier: 124027835

GI number: 124027835

Start: 972157

End: 972870

Strand: Direct

Name: deoC [H]

Synonym: Hbut_0962

Alternate gene names: 124027835

Gene position: 972157-972870 (Clockwise)

Preceding gene: 124027834

Following gene: 124027840

Centisome position: 58.31

GC content: 46.92

Gene sequence:

>714_bases
ATGTCCGAGTCCTTCTTCTGCAGGTTTGGAGTCAGCGAAATAGCCTCAAGAATAGACCATGCAGTACTAAAGCCATGGAG
TTCTGTGAGCGAGCTAGAAAAAGCCATCAGGGAGCTAGAAGAGCTAAACCTCAGATGCCTAATAATAAGCCCAACACACC
TACGCCTAGCGCGAGAGAAGACGAACAAGTGTCTAGGCGTGGTAGTAGGATTTCCATTCGGCTACTCAACAATAGAGGCT
AAGATCAAGGAATTGGAAGACAGTATAGCACTAGGTGCCCAGGAAATAGACTATGTAGCTAATACGCAACTCCTACTAGC
AGGCAGGACAGAGGAATATCTCAACGAGATCCGAGCAGCAATAACAATATGTAGAGACTCTGGTGTAAAATGCAAGGTAA
TAATTGAGGCTCCAGCATTGCCCAGAAACCTGCTGGTAGAGATCGTCGAGAAAATAGCAATGATGGATCCGCATCCTGAC
TACATAAAGACTAGTACAGGCTACGGGCCAAGACCAACATATGTGGAGGATGTTTACCTCATAGACCAAACGCTCCGTAG
AATAGGTAAGCGAGACGAAATAGGCATCAAAGCAGCAGGCGGTATACGCGAAGGGTTACAAGCGGCAGCGATGCTCCTTG
CAGGAGCAGATGTTATAGGCACAAGCACTCCTAGACAAGTAATCGAGACGTACAAGGAACTCTGCAGAATCTAG

Upstream 100 bases:

>100_bases
AGAGAAGATCGAAACTGGAGACTGGATAGAATAACTACGTAACCACGAGAATCGATAATTCCAGGTAACAGCAATGTAGA
AACATGGTGAGGCAGGAAAC

Downstream 100 bases:

>100_bases
AATCAGCACCATACATTGTGATGAAACGACGGTCTCATGAGCCTCTTGGCGATGAAGACCATTCTCCTTGCTGATGGCTT
ACTTATAGAGCTGAGGGCTC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSESFFCRFGVSEIASRIDHAVLKPWSSVSELEKAIRELEELNLRCLIISPTHLRLAREKTNKCLGVVVGFPFGYSTIEA
KIKELEDSIALGAQEIDYVANTQLLLAGRTEEYLNEIRAAITICRDSGVKCKVIIEAPALPRNLLVEIVEKIAMMDPHPD
YIKTSTGYGPRPTYVEDVYLIDQTLRRIGKRDEIGIKAAGGIREGLQAAAMLLAGADVIGTSTPRQVIETYKELCRI

Sequences:

>Translated_237_residues
MSESFFCRFGVSEIASRIDHAVLKPWSSVSELEKAIRELEELNLRCLIISPTHLRLAREKTNKCLGVVVGFPFGYSTIEA
KIKELEDSIALGAQEIDYVANTQLLLAGRTEEYLNEIRAAITICRDSGVKCKVIIEAPALPRNLLVEIVEKIAMMDPHPD
YIKTSTGYGPRPTYVEDVYLIDQTLRRIGKRDEIGIKAAGGIREGLQAAAMLLAGADVIGTSTPRQVIETYKELCRI
>Mature_236_residues
SESFFCRFGVSEIASRIDHAVLKPWSSVSELEKAIRELEELNLRCLIISPTHLRLAREKTNKCLGVVVGFPFGYSTIEAK
IKELEDSIALGAQEIDYVANTQLLLAGRTEEYLNEIRAAITICRDSGVKCKVIIEAPALPRNLLVEIVEKIAMMDPHPDY
IKTSTGYGPRPTYVEDVYLIDQTLRRIGKRDEIGIKAAGGIREGLQAAAMLLAGADVIGTSTPRQVIETYKELCRI

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790841, Length=185, Percent_Identity=29.7297297297297, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 26309; Mature: 26178

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESFFCRFGVSEIASRIDHAVLKPWSSVSELEKAIRELEELNLRCLIISPTHLRLAREK
CCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
TNKCLGVVVGFPFGYSTIEAKIKELEDSIALGAQEIDYVANTQLLLAGRTEEYLNEIRAA
HCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHH
ITICRDSGVKCKVIIEAPALPRNLLVEIVEKIAMMDPHPDYIKTSTGYGPRPTYVEDVYL
HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHH
IDQTLRRIGKRDEIGIKAAGGIREGLQAAAMLLAGADVIGTSTPRQVIETYKELCRI
HHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SESFFCRFGVSEIASRIDHAVLKPWSSVSELEKAIRELEELNLRCLIISPTHLRLAREK
CCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
TNKCLGVVVGFPFGYSTIEAKIKELEDSIALGAQEIDYVANTQLLLAGRTEEYLNEIRAA
HCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHH
ITICRDSGVKCKVIIEAPALPRNLLVEIVEKIAMMDPHPDYIKTSTGYGPRPTYVEDVYL
HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHH
IDQTLRRIGKRDEIGIKAAGGIREGLQAAAMLLAGADVIGTSTPRQVIETYKELCRI
HHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663928 [H]