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The map label for this gene is potA [H]

Identifier: 124027690

GI number: 124027690

Start: 806692

End: 807303

Strand: Direct

Name: potA [H]

Synonym: Hbut_0812

Alternate gene names: 124027690

Gene position: 806692-807303 (Clockwise)

Preceding gene: 124027689

Following gene: 124027691

Centisome position: 48.39

GC content: 57.52

Gene sequence:

>612_bases
ATGGATGTCCTCAACCGGAAGCCGGGGAGCCTCAGTGGCGGCCAGCTACAGCGTGCAGCTATAGCACTCGCACTCGCCAT
GGAGCCCTCCCTGCTACTCCTCGACGAGCCCCTAAGCCACCTCGACCGCCCACTAGCCGAGGAACTCCGGGGGGTGCTTA
GAAGGCTGCACCGCGACTACGGTATAACGATAGTACACGTGACCCATGACCAAGACGAGGCTCTGGCGCTTGCCACGAGA
ATAGCGATAATGAGGAGCGGCAAGATAATAGCATTTGGGGAGGCACCTACTATATACTATAGGCCGCCTAGCCCCGAAGC
CGCAAGATTTCTCGGCCACAACTTGGTTGACGCCCACCTCCTCGGCCAAGGCGAGGGAGTAATAGCCATACCTCCGGAGG
CCATTGAGCTGGGGAGCGGAGAGTACGAGGCAACCATAGCTTCCGTTGAGGTTGAGAGGGGCCGTTACACTATGAGGCTG
CTGGTTAACAACACCGTGGAGCTTAGAGCATACGTTCACCCGCTAAGGGCAAAGAGGCTGAGGCCCGGCACGAAAACCCG
CTTTAATATAGACTGGAGCCTTACAATCACATACCCGGCTGAGACAAAGTGA

Upstream 100 bases:

>100_bases
GGTTGAGGAGAACATTGTACTGGCGGCTATTAGCCGTACTGGGCTCCCAAGGAGCGAGGCGCGGAGGAGAGCTAGGGAGC
TAGCTGAGATCCTGAGAATA

Downstream 100 bases:

>100_bases
AGCACCCTAGGGGGAGGAGGCTCTACATAATCTTAGCATTTGCACTGGTAGCCGTAGCTGCGGCTAGGTATGCTGTGCTG
GTGCATACTGCTAGTAGCTC

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MDVLNRKPGSLSGGQLQRAAIALALAMEPSLLLLDEPLSHLDRPLAEELRGVLRRLHRDYGITIVHVTHDQDEALALATR
IAIMRSGKIIAFGEAPTIYYRPPSPEAARFLGHNLVDAHLLGQGEGVIAIPPEAIELGSGEYEATIASVEVERGRYTMRL
LVNNTVELRAYVHPLRAKRLRPGTKTRFNIDWSLTITYPAETK

Sequences:

>Translated_203_residues
MDVLNRKPGSLSGGQLQRAAIALALAMEPSLLLLDEPLSHLDRPLAEELRGVLRRLHRDYGITIVHVTHDQDEALALATR
IAIMRSGKIIAFGEAPTIYYRPPSPEAARFLGHNLVDAHLLGQGEGVIAIPPEAIELGSGEYEATIASVEVERGRYTMRL
LVNNTVELRAYVHPLRAKRLRPGTKTRFNIDWSLTITYPAETK
>Mature_203_residues
MDVLNRKPGSLSGGQLQRAAIALALAMEPSLLLLDEPLSHLDRPLAEELRGVLRRLHRDYGITIVHVTHDQDEALALATR
IAIMRSGKIIAFGEAPTIYYRPPSPEAARFLGHNLVDAHLLGQGEGVIAIPPEAIELGSGEYEATIASVEVERGRYTMRL
LVNNTVELRAYVHPLRAKRLRPGTKTRFNIDWSLTITYPAETK

Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]

COG id: COG3839

COG function: function code G; ABC-type sugar transport systems, ATPase components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787712, Length=207, Percent_Identity=38.1642512077295, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787370, Length=117, Percent_Identity=47.8632478632479, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI87081709, Length=152, Percent_Identity=38.1578947368421, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1790467, Length=110, Percent_Identity=45.4545454545455, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI87081791, Length=108, Percent_Identity=47.2222222222222, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788761, Length=107, Percent_Identity=48.5981308411215, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI87082267, Length=137, Percent_Identity=38.6861313868613, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788450, Length=116, Percent_Identity=42.2413793103448, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787500, Length=104, Percent_Identity=33.6538461538462, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788644, Length=108, Percent_Identity=42.5925925925926, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1789032, Length=104, Percent_Identity=38.4615384615385, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787029, Length=106, Percent_Identity=41.5094339622642, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1786872, Length=111, Percent_Identity=39.6396396396396, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789891, Length=119, Percent_Identity=36.9747899159664, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788225, Length=104, Percent_Identity=42.3076923076923, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786398, Length=108, Percent_Identity=35.1851851851852, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1787164, Length=82, Percent_Identity=47.5609756097561, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787089, Length=109, Percent_Identity=39.4495412844037, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787758, Length=104, Percent_Identity=35.5769230769231, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI48994883, Length=124, Percent_Identity=32.258064516129, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788506, Length=98, Percent_Identity=34.6938775510204, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI145693107, Length=107, Percent_Identity=33.6448598130841, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789672, Length=105, Percent_Identity=37.1428571428571, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790162, Length=110, Percent_Identity=34.5454545454545, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786803, Length=84, Percent_Identity=44.047619047619, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1786563, Length=78, Percent_Identity=43.5897435897436, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1786981, Length=97, Percent_Identity=47.4226804123711, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789963, Length=102, Percent_Identity=34.3137254901961, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787759, Length=105, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786253, Length=88, Percent_Identity=38.6363636363636, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1789962, Length=101, Percent_Identity=30.6930693069307, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787182, Length=83, Percent_Identity=39.7590361445783, Blast_Score=61, Evalue=4e-11,
Organism=Escherichia coli, GI1790544, Length=94, Percent_Identity=36.1702127659575, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR017879
- InterPro:   IPR005893
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: =3.6.3.31 [H]

Molecular weight: Translated: 22473; Mature: 22473

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLNRKPGSLSGGQLQRAAIALALAMEPSLLLLDEPLSHLDRPLAEELRGVLRRLHRDY
CCCCCCCCCCCCCCHHHHHHEEEEEECCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHCC
GITIVHVTHDQDEALALATRIAIMRSGKIIAFGEAPTIYYRPPSPEAARFLGHNLVDAHL
CEEEEEEECCCCHHHHHHHHHHHEECCCEEEECCCCEEEECCCCCHHHHHHCCCCEEEEE
LGQGEGVIAIPPEAIELGSGEYEATIASVEVERGRYTMRLLVNNTVELRAYVHPLRAKRL
ECCCCCEEEECCHHEECCCCCEEEEEEEEEEECCCEEEEEEECCCEEEHHHHHHHHHHHC
RPGTKTRFNIDWSLTITYPAETK
CCCCCEEEEEEEEEEEEECCCCC
>Mature Secondary Structure
MDVLNRKPGSLSGGQLQRAAIALALAMEPSLLLLDEPLSHLDRPLAEELRGVLRRLHRDY
CCCCCCCCCCCCCCHHHHHHEEEEEECCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHCC
GITIVHVTHDQDEALALATRIAIMRSGKIIAFGEAPTIYYRPPSPEAARFLGHNLVDAHL
CEEEEEEECCCCHHHHHHHHHHHEECCCEEEECCCCEEEECCCCCHHHHHHCCCCEEEEE
LGQGEGVIAIPPEAIELGSGEYEATIASVEVERGRYTMRLLVNNTVELRAYVHPLRAKRL
ECCCCCEEEECCHHEECCCCCEEEEEEEEEEECCCEEEEEEECCCEEEHHHHHHHHHHHC
RPGTKTRFNIDWSLTITYPAETK
CCCCCEEEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA