Click here to switch to the map view.

The map label for this gene is ygbD [C]

Identifier: 124027680

GI number: 124027680

Start: 796914

End: 798323

Strand: Direct

Name: ygbD [C]

Synonym: Hbut_0802

Alternate gene names: 124027680

Gene position: 796914-798323 (Clockwise)

Preceding gene: 124027677

Following gene: 124027682

Centisome position: 47.8

GC content: 55.96

Gene sequence:

>1410_bases
TTGCTACGTGTCGCAGTTATAGGCGGCGGAGCAGCTGGGATGGCTACTGCTAGCCGCGTCAAGCGCCTTCTACGGGACCG
CGCTGAGGTAGTGGTGTTCGAGAAAACGCCATGGGTTAGCTTTGCCCTTTGCGGCACCCCCTACTACCTGAGCTGCAAGG
TGAAGACGCTCAATGATCTCCTCCACTATCCCCTTGAGGAGTTTACGGAGAAGCGCGGCATAAATGTGATGCTTAGGACG
GAAGTTACCGACGTGGAGCTTGACGCTAGGAGGCTCAGGTACCGGAGGCTAGACACTGGCGAGACCGGTGTCTACGAGTT
CGACTATGTCGTATTCGCCACTGGTGCTAGGCCACGAGCGCCCAAGAATTGGCTACGATTCCGCAACGTCTTCACCCTTC
ACAGTCTCGCAGACGCTGATAGGCTTAGAGAGGCCGTTGTAAGGGATTCTGTACGCCGCGTCATAGTAATCGGTGCCGGC
TATACAGGGATAGAAGCCGCTGACAACATCGCACTGCTAGGCCGCAGGGTCGTCATAGTGCATAGTAGCAAGAGGATTCT
CAGCCGCAGCCTAGACCCGGATATAGCTGAAAAGGTTGAAGAACGTGCAAAAACTGCCGGAATAGAGTTCGTCCTTGGCA
GAAGCGTAGTAGATGTAGAGGGCTCTGAGGGCTACGCTAGGAGTGTAGTCTTAGACAACGGGGAGAAGATGTATGGCGAC
CTCTTCGTAGTTAGCATGGGCATAGAGCCCAACGTCGAGCTTGCCCGGAGGGCGGGGGTGAGGATAGGCGGGACTGGAGC
AATCTGGGTCGATACTAGGCTTAGGACGAGTAGAGAGGAGGCATACGCTGTCGGAGATGTTGCTGAGACCGTCGACATAC
TCACCGGGGAGAGAATATGGTGGCCCTTCGCCACTGCAGCCAATAAGATGGGGTTTGTAGCTGGGACAAACATTGCGGGA
GGCGATGCATTCTTCCCCGGCGTTGTTAGGACTAGGGCCATGGGGGCCTTTGGCCTCTACATTGCCGGCACTGGTCTACT
GGAGGAGGAGGCTCGTAGAATGGGCTTTGACGTGGTAACTGCAACTCTAACAGCTCATACCAGGGCCAGGTATATGGGCC
ACGGGCCGGAGATAGTGTTGAAGGTGCTCGCAGATGCTAACACTGGTATGCTTTTGGGAGCACAAGCATTGTCTGAGGAT
CCGAGCGCCTTCTGGAGGATTGCTGTGGTTGCGACACTACTGATGAAGAAGGCTAGCGTTTGGGACCTCTTCAACGCCGA
TATAGGCTATTGGCCCGGGGTGAACACTGTATGGGACCCACTGGTTGTTGCAGCGAGACTGCTATTACGCAGGCTCGGCA
CGAGGCCTAGGGAGGTTTCCCGCCAAGATACCGGCTCCAAAGGGGCCTAG

Upstream 100 bases:

>100_bases
CATCCCCCGAGGGCATGCAATGCCAGGCCACCTATTAGGCCACAGTCTGCCGTGCACAATTTAAACACGCGTTGTGCCGA
CTACGATAGGGTTTAGGGTC

Downstream 100 bases:

>100_bases
AGACCACGGTGTTAAAGGCAAACAACGCGTAACCTGCAACTATTAAGGCTGGAGAGGGTTCTGCTACAACCTTCTCAGCC
ATGGAGGCTAGGGCGAGCCA

Product: NADH oxidase

Products: NA

Alternate protein names: CoA-disulfide reductase; CoADR [H]

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MLRVAVIGGGAAGMATASRVKRLLRDRAEVVVFEKTPWVSFALCGTPYYLSCKVKTLNDLLHYPLEEFTEKRGINVMLRT
EVTDVELDARRLRYRRLDTGETGVYEFDYVVFATGARPRAPKNWLRFRNVFTLHSLADADRLREAVVRDSVRRVIVIGAG
YTGIEAADNIALLGRRVVIVHSSKRILSRSLDPDIAEKVEERAKTAGIEFVLGRSVVDVEGSEGYARSVVLDNGEKMYGD
LFVVSMGIEPNVELARRAGVRIGGTGAIWVDTRLRTSREEAYAVGDVAETVDILTGERIWWPFATAANKMGFVAGTNIAG
GDAFFPGVVRTRAMGAFGLYIAGTGLLEEEARRMGFDVVTATLTAHTRARYMGHGPEIVLKVLADANTGMLLGAQALSED
PSAFWRIAVVATLLMKKASVWDLFNADIGYWPGVNTVWDPLVVAARLLLRRLGTRPREVSRQDTGSKGA

Sequences:

>Translated_469_residues
MLRVAVIGGGAAGMATASRVKRLLRDRAEVVVFEKTPWVSFALCGTPYYLSCKVKTLNDLLHYPLEEFTEKRGINVMLRT
EVTDVELDARRLRYRRLDTGETGVYEFDYVVFATGARPRAPKNWLRFRNVFTLHSLADADRLREAVVRDSVRRVIVIGAG
YTGIEAADNIALLGRRVVIVHSSKRILSRSLDPDIAEKVEERAKTAGIEFVLGRSVVDVEGSEGYARSVVLDNGEKMYGD
LFVVSMGIEPNVELARRAGVRIGGTGAIWVDTRLRTSREEAYAVGDVAETVDILTGERIWWPFATAANKMGFVAGTNIAG
GDAFFPGVVRTRAMGAFGLYIAGTGLLEEEARRMGFDVVTATLTAHTRARYMGHGPEIVLKVLADANTGMLLGAQALSED
PSAFWRIAVVATLLMKKASVWDLFNADIGYWPGVNTVWDPLVVAARLLLRRLGTRPREVSRQDTGSKGA
>Mature_469_residues
MLRVAVIGGGAAGMATASRVKRLLRDRAEVVVFEKTPWVSFALCGTPYYLSCKVKTLNDLLHYPLEEFTEKRGINVMLRT
EVTDVELDARRLRYRRLDTGETGVYEFDYVVFATGARPRAPKNWLRFRNVFTLHSLADADRLREAVVRDSVRRVIVIGAG
YTGIEAADNIALLGRRVVIVHSSKRILSRSLDPDIAEKVEERAKTAGIEFVLGRSVVDVEGSEGYARSVVLDNGEKMYGD
LFVVSMGIEPNVELARRAGVRIGGTGAIWVDTRLRTSREEAYAVGDVAETVDILTGERIWWPFATAANKMGFVAGTNIAG
GDAFFPGVVRTRAMGAFGLYIAGTGLLEEEARRMGFDVVTATLTAHTRARYMGHGPEIVLKVLADANTGMLLGAQALSED
PSAFWRIAVVATLLMKKASVWDLFNADIGYWPGVNTVWDPLVVAARLLLRRLGTRPREVSRQDTGSKGA

Specific function: Unknown

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI226437568, Length=329, Percent_Identity=24.0121580547112, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI21389617, Length=329, Percent_Identity=24.0121580547112, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI65787454, Length=329, Percent_Identity=24.0121580547112, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1789065, Length=291, Percent_Identity=26.4604810996564, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1788892, Length=218, Percent_Identity=31.1926605504587, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1789765, Length=403, Percent_Identity=23.5732009925558, Blast_Score=66, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17559934, Length=290, Percent_Identity=25.1724137931034, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24585130, Length=283, Percent_Identity=22.6148409893993, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24639257, Length=255, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281359715, Length=255, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281359713, Length=255, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639250, Length=255, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18543267, Length=255, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639252, Length=255, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017758
- InterPro:   IPR016156
- InterPro:   IPR013027
- InterPro:   IPR004099
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]

EC number: =1.8.1.14 [H]

Molecular weight: Translated: 51543; Mature: 51543

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVAVIGGGAAGMATASRVKRLLRDRAEVVVFEKTPWVSFALCGTPYYLSCKVKTLNDL
CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCEEEEEEHHHHHHH
LHYPLEEFTEKRGINVMLRTEVTDVELDARRLRYRRLDTGETGVYEFDYVVFATGARPRA
HHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCC
PKNWLRFRNVFTLHSLADADRLREAVVRDSVRRVIVIGAGYTGIEAADNIALLGRRVVIV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCEEEEE
HSSKRILSRSLDPDIAEKVEERAKTAGIEFVLGRSVVDVEGSEGYARSVVLDNGEKMYGD
ECCHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCEEEEECCCCCCEEEEEEECCCEEEEE
LFVVSMGIEPNVELARRAGVRIGGTGAIWVDTRLRTSREEAYAVGDVAETVDILTGERIW
EEEEEECCCCCHHHHHHCCCEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEE
WPFATAANKMGFVAGTNIAGGDAFFPGVVRTRAMGAFGLYIAGTGLLEEEARRMGFDVVT
EEHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHCCHHHEE
ATLTAHTRARYMGHGPEIVLKVLADANTGMLLGAQALSEDPSAFWRIAVVATLLMKKASV
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHH
WDLFNADIGYWPGVNTVWDPLVVAARLLLRRLGTRPREVSRQDTGSKGA
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCC
>Mature Secondary Structure
MLRVAVIGGGAAGMATASRVKRLLRDRAEVVVFEKTPWVSFALCGTPYYLSCKVKTLNDL
CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCEEEEEEHHHHHHH
LHYPLEEFTEKRGINVMLRTEVTDVELDARRLRYRRLDTGETGVYEFDYVVFATGARPRA
HHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCC
PKNWLRFRNVFTLHSLADADRLREAVVRDSVRRVIVIGAGYTGIEAADNIALLGRRVVIV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCEEEEE
HSSKRILSRSLDPDIAEKVEERAKTAGIEFVLGRSVVDVEGSEGYARSVVLDNGEKMYGD
ECCHHHHHCCCCHHHHHHHHHHHHHCCEEEEECCEEEEECCCCCCEEEEEEECCCEEEEE
LFVVSMGIEPNVELARRAGVRIGGTGAIWVDTRLRTSREEAYAVGDVAETVDILTGERIW
EEEEEECCCCCHHHHHHCCCEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEE
WPFATAANKMGFVAGTNIAGGDAFFPGVVRTRAMGAFGLYIAGTGLLEEEARRMGFDVVT
EEHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHCCHHHEE
ATLTAHTRARYMGHGPEIVLKVLADANTGMLLGAQALSEDPSAFWRIAVVATLLMKKASV
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHH
WDLFNADIGYWPGVNTVWDPLVVAARLLLRRLGTRPREVSRQDTGSKGA
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA