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The map label for this gene is ygcB [C]

Identifier: 124027522

GI number: 124027522

Start: 621044

End: 622552

Strand: Reverse

Name: ygcB [C]

Synonym: Hbut_0640

Alternate gene names: 124027522

Gene position: 622552-621044 (Counterclockwise)

Preceding gene: 124027523

Following gene: 124027521

Centisome position: 37.34

GC content: 56.13

Gene sequence:

>1509_bases
TTGCCGGGTCTAAGCCTTGACCCTGAGGGCTATAGCCCATTTATGCTCCGTAGAGCTGTGGTCTCGACTCTTGACAGCTT
TGCGTTAAACCTTGCAAGACTCCCCGTGGCAGAGCTATCACTGGTACTCACCGGCTACGAGATGAGGAGGCTTGAAGGCC
ACTATGAGCTTCCACGGGCTTCGATATTAACCTCCCTAGTAGTCTTCGACGAAGCTCACCTTTACGCTGAGCCCTGGCTA
GAGGGGGAGACTCCGTTCTCACGCCTATACCTCTCAACGGTACTCCCCATACTGAGGGATACCCGTACACCAGTGGTTGT
GGAGACCGCCACTATGTCTACCAAGCTGACGGAGAGTATTGCAGCCACCACTGGTGCCACTGTGCTGGCAGTCTGCAGGA
GCTGCAACCGCTGCGGCAAAGGCTGGAAATGCATTCCCGATACCGCGTTCGAGGAGGAGAACATGTTTGACTGGAAAACA
GTCATCCTCAAGACCTCAAGCGAGGCTATACGCTTAGCGGTAGATCATGCTGAAGCTGGGCGCAAGGTGCTATACGCTGT
CAACACCGTGGGGTCAGCCCTGAAGACCTACCGAGAGCTGCGCGCCATGCTTGGCGAGGAGAACGTGGTACTTGTTCACG
GGCGGTTAGCCCAGAGGGACAGGGAGGAGGCTATCAAGAAGATAGAGAGAGCAAAAGTCGTCGTTGCCACGCAGGTCGTA
GAAGCCGGTGTAGACGTTGACGCTGAGGTCCTGGTTACAGAGGCTGCGGCACCCAGCAGCCTAGCCCAGCGCGCGGGAAG
GCTCTGTAGGAGCCAGAGAACAGCGGAGAAATGCCGCAGTGACCCACCCATAGTAGCCATATACGTTCCCAACACACTAC
ACCCCTACGGCAGCATAGCAGTGGAGACGGTGAAGACTGTAAAGCAGCTCGTGGAAGCACGGCGAGTCGGGATAGAGTGG
AGGCTACTAGACGATAATGGTGGGAGGAAGAGCTTCCGCCACCTCGTAGAAGCCCATGAAGCTGTAGGCCTGGAAGTAGA
GCAGCCAAGAGCAAAGCTACTAGCCTACAGGAGGCTCCTAGCCAACGTGGTGGCTTCAGCCCTCGGTGACCCCAGGCCAG
CACGCATGCTCATCGAGCAGTTCTGCAGCCTAGTCCGGGGCACCGCCCTGGTACACCTCGCAGCCCCACTTAACGAGGGC
TACGACTTTCTTGAAGCACCACTAGACTGGCTACGCGCCAGGGGGAGGTGGAAGAGTCTATTAAACTGCAGCAACGGCAT
CTGCAACGTTATAGGTATTGGATACGCCGGCGAAGAACCCGAAGTAGTTGAAGCCCAAGCCCCAGCTAGAGATGTAGAAG
CAATGCTAGCCAACTGCAGTAGCTACCTAAGAACGTATTACAAGCTCCTAGAGAACCTTTCCAAGGACACCGGTGCAAGG
CTCCACACTATAGCTCTAGCACTGCGAGAAGACGCGTACACACCGGGCATAGGCCTCAAAACACTCTAA

Upstream 100 bases:

>100_bases
GGGATAGCAGCTAGGGCGGTGCACGTCCTCCCTCTGAGAGCCCTTGTGAGGCAGCAGTACGAATACCTCCGCGGCATCCT
TGGCCGAGATGCTGGCTATC

Downstream 100 bases:

>100_bases
CCAACACATGAAGGTGCAAATCATGGCCTTATATGCCTGGATTGGTGTAAGGCTCCGCGACCACAGCATAAACACTCTAG
GACTCATGCTAGGCCTCTTT

Product: helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MPGLSLDPEGYSPFMLRRAVVSTLDSFALNLARLPVAELSLVLTGYEMRRLEGHYELPRASILTSLVVFDEAHLYAEPWL
EGETPFSRLYLSTVLPILRDTRTPVVVETATMSTKLTESIAATTGATVLAVCRSCNRCGKGWKCIPDTAFEEENMFDWKT
VILKTSSEAIRLAVDHAEAGRKVLYAVNTVGSALKTYRELRAMLGEENVVLVHGRLAQRDREEAIKKIERAKVVVATQVV
EAGVDVDAEVLVTEAAAPSSLAQRAGRLCRSQRTAEKCRSDPPIVAIYVPNTLHPYGSIAVETVKTVKQLVEARRVGIEW
RLLDDNGGRKSFRHLVEAHEAVGLEVEQPRAKLLAYRRLLANVVASALGDPRPARMLIEQFCSLVRGTALVHLAAPLNEG
YDFLEAPLDWLRARGRWKSLLNCSNGICNVIGIGYAGEEPEVVEAQAPARDVEAMLANCSSYLRTYYKLLENLSKDTGAR
LHTIALALREDAYTPGIGLKTL

Sequences:

>Translated_502_residues
MPGLSLDPEGYSPFMLRRAVVSTLDSFALNLARLPVAELSLVLTGYEMRRLEGHYELPRASILTSLVVFDEAHLYAEPWL
EGETPFSRLYLSTVLPILRDTRTPVVVETATMSTKLTESIAATTGATVLAVCRSCNRCGKGWKCIPDTAFEEENMFDWKT
VILKTSSEAIRLAVDHAEAGRKVLYAVNTVGSALKTYRELRAMLGEENVVLVHGRLAQRDREEAIKKIERAKVVVATQVV
EAGVDVDAEVLVTEAAAPSSLAQRAGRLCRSQRTAEKCRSDPPIVAIYVPNTLHPYGSIAVETVKTVKQLVEARRVGIEW
RLLDDNGGRKSFRHLVEAHEAVGLEVEQPRAKLLAYRRLLANVVASALGDPRPARMLIEQFCSLVRGTALVHLAAPLNEG
YDFLEAPLDWLRARGRWKSLLNCSNGICNVIGIGYAGEEPEVVEAQAPARDVEAMLANCSSYLRTYYKLLENLSKDTGAR
LHTIALALREDAYTPGIGLKTL
>Mature_501_residues
PGLSLDPEGYSPFMLRRAVVSTLDSFALNLARLPVAELSLVLTGYEMRRLEGHYELPRASILTSLVVFDEAHLYAEPWLE
GETPFSRLYLSTVLPILRDTRTPVVVETATMSTKLTESIAATTGATVLAVCRSCNRCGKGWKCIPDTAFEEENMFDWKTV
ILKTSSEAIRLAVDHAEAGRKVLYAVNTVGSALKTYRELRAMLGEENVVLVHGRLAQRDREEAIKKIERAKVVVATQVVE
AGVDVDAEVLVTEAAAPSSLAQRAGRLCRSQRTAEKCRSDPPIVAIYVPNTLHPYGSIAVETVKTVKQLVEARRVGIEWR
LLDDNGGRKSFRHLVEAHEAVGLEVEQPRAKLLAYRRLLANVVASALGDPRPARMLIEQFCSLVRGTALVHLAAPLNEGY
DFLEAPLDWLRARGRWKSLLNCSNGICNVIGIGYAGEEPEVVEAQAPARDVEAMLANCSSYLRTYYKLLENLSKDTGARL
HTIALALREDAYTPGIGLKTL

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 55321; Mature: 55190

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGLSLDPEGYSPFMLRRAVVSTLDSFALNLARLPVAELSLVLTGYEMRRLEGHYELPRA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHH
SILTSLVVFDEAHLYAEPWLEGETPFSRLYLSTVLPILRDTRTPVVVETATMSTKLTESI
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHH
AATTGATVLAVCRSCNRCGKGWKCIPDTAFEEENMFDWKTVILKTSSEAIRLAVDHAEAG
HHHCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHCC
RKVLYAVNTVGSALKTYRELRAMLGEENVVLVHGRLAQRDREEAIKKIERAKVVVATQVV
CEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
EAGVDVDAEVLVTEAAAPSSLAQRAGRLCRSQRTAEKCRSDPPIVAIYVPNTLHPYGSIA
HHCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
VETVKTVKQLVEARRVGIEWRLLDDNGGRKSFRHLVEAHEAVGLEVEQPRAKLLAYRRLL
HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
ANVVASALGDPRPARMLIEQFCSLVRGTALVHLAAPLNEGYDFLEAPLDWLRARGRWKSL
HHHHHHHHCCCCHHHHHHHHHHHHHHCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
LNCSNGICNVIGIGYAGEEPEVVEAQAPARDVEAMLANCSSYLRTYYKLLENLSKDTGAR
HHCCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCH
LHTIALALREDAYTPGIGLKTL
HHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PGLSLDPEGYSPFMLRRAVVSTLDSFALNLARLPVAELSLVLTGYEMRRLEGHYELPRA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHH
SILTSLVVFDEAHLYAEPWLEGETPFSRLYLSTVLPILRDTRTPVVVETATMSTKLTESI
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHH
AATTGATVLAVCRSCNRCGKGWKCIPDTAFEEENMFDWKTVILKTSSEAIRLAVDHAEAG
HHHCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHHCC
RKVLYAVNTVGSALKTYRELRAMLGEENVVLVHGRLAQRDREEAIKKIERAKVVVATQVV
CEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
EAGVDVDAEVLVTEAAAPSSLAQRAGRLCRSQRTAEKCRSDPPIVAIYVPNTLHPYGSIA
HHCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
VETVKTVKQLVEARRVGIEWRLLDDNGGRKSFRHLVEAHEAVGLEVEQPRAKLLAYRRLL
HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
ANVVASALGDPRPARMLIEQFCSLVRGTALVHLAAPLNEGYDFLEAPLDWLRARGRWKSL
HHHHHHHHCCCCHHHHHHHHHHHHHHCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
LNCSNGICNVIGIGYAGEEPEVVEAQAPARDVEAMLANCSSYLRTYYKLLENLSKDTGAR
HHCCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCH
LHTIALALREDAYTPGIGLKTL
HHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]