Click here to switch to the map view.

The map label for this gene is fni [H]

Identifier: 124027424

GI number: 124027424

Start: 518505

End: 519656

Strand: Direct

Name: fni [H]

Synonym: Hbut_0539

Alternate gene names: 124027424

Gene position: 518505-519656 (Clockwise)

Preceding gene: 124027423

Following gene: 124027425

Centisome position: 31.1

GC content: 55.99

Gene sequence:

>1152_bases
TTGCAGACAAAGACGCGGAAGCTTGACCACATAAGGATAACAGTTGACAGTGATGTTGAGCATCCAGGGAAGATCACGCT
GCTAGAACACGTCGAGCTGGTACACCGCGCGCTCCCCGAGACGGCGCTCTCAAGCATTGATACCAGCATAGAGTTTCTCG
GTAAGCAGCTCAGCATGCCGCTAATGGTTACAGGCATGACTGGTGGTCACCCAGTGGCTGCGAGGATAAACTGTGTAATC
GCTAGAGCGGCGGCGCGGCTAGGCATAGCAATTGGCGTGGGGAGCCAGCGTGCAGCAATAGAGGATCCATCGCTAGAGTA
TACGTTCCGTGTTGCGAGGGATTGTGCCAGGGAGGAGGGTGGTGATGTGGTCCTCGTTGCAAACCTTGGGGCTGCGCAAC
TCGTGGCAGGCTACGGTGTTGAGCATGTGAGGAGGGCTATAGAGATGATTGATGCTGACGCTGTGGCGATACATGTTAAT
GCTGCGCAGGAAGCTTTCCAGCCGGAGGGAGATGTAGACTTCCGTAACGCCATAGACCTTGTAGCCGAGGTTGCGAGAGA
GCTGGACAAACCCGTAATAGTCAAGGAGACCGGGCATGGCCTAGGCTACGAGGTTGTATATGTGCTCCGTGGCCGAGGGA
TAAGGTTCTTCGACGTCTCAGGAGCTGGCGGTACTAGCTGGGTACGCGTTGAATACTTCCGTGCCAGGATACGAGGCCTC
CAGGGCCTAGCAGAGGCTGCCAAAACATTCTCGTCCTGGGGCATACCCACAGCCCAAGCAGTGGTTGAGACCCGCTGGGC
AGCACCAGACTCATGCATAATAGCTAGCGGTGGAGTGAGAACCGGGCTTGATGCCGCGAAAGCAATAGCGCTAGGCGCCG
ATATTGCCGGCCTCGCATTGCCAGTAATAAGAGCCTATACGGTTGGTGACCTCGACGGTGTTATAGGGCTCCTCGAGAGG
ATAGGTATGGAGTTCAAGGCGGCACTATTCCTTACGGGTGCTAGCAGCCTCGCTGAGGCTAGGAGGCTACCACTAATCGT
TAGTCCCGAGCTAGAATCGAGGCTCCAGGCTCGGGGAGTAAAGCTGGATCTCTACCTTAACGGTGCCAGACTCCTTTTCA
AGCCCGGTGAGACATGTAGCAACTGGGCCTAG

Upstream 100 bases:

>100_bases
GAGCCGAACAACATAGAGCAAGCAGTACTGGGCGCAGCGGGGGTTGGCACTGAAATACTCCCCTAGGAAGTCCTGCATCA
TGTGAGGTGTACGGTAGGCC

Downstream 100 bases:

>100_bases
CCGGCAGAGGGCATGGGTTATGACCGGCCAGCTACCCGAGAGCGTTGTGGCCTACTTGAAGCGAGTTGCCAGCCTAGTAG
ACGGCTACATATACGCTAAG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MQTKTRKLDHIRITVDSDVEHPGKITLLEHVELVHRALPETALSSIDTSIEFLGKQLSMPLMVTGMTGGHPVAARINCVI
ARAAARLGIAIGVGSQRAAIEDPSLEYTFRVARDCAREEGGDVVLVANLGAAQLVAGYGVEHVRRAIEMIDADAVAIHVN
AAQEAFQPEGDVDFRNAIDLVAEVARELDKPVIVKETGHGLGYEVVYVLRGRGIRFFDVSGAGGTSWVRVEYFRARIRGL
QGLAEAAKTFSSWGIPTAQAVVETRWAAPDSCIIASGGVRTGLDAAKAIALGADIAGLALPVIRAYTVGDLDGVIGLLER
IGMEFKAALFLTGASSLAEARRLPLIVSPELESRLQARGVKLDLYLNGARLLFKPGETCSNWA

Sequences:

>Translated_383_residues
MQTKTRKLDHIRITVDSDVEHPGKITLLEHVELVHRALPETALSSIDTSIEFLGKQLSMPLMVTGMTGGHPVAARINCVI
ARAAARLGIAIGVGSQRAAIEDPSLEYTFRVARDCAREEGGDVVLVANLGAAQLVAGYGVEHVRRAIEMIDADAVAIHVN
AAQEAFQPEGDVDFRNAIDLVAEVARELDKPVIVKETGHGLGYEVVYVLRGRGIRFFDVSGAGGTSWVRVEYFRARIRGL
QGLAEAAKTFSSWGIPTAQAVVETRWAAPDSCIIASGGVRTGLDAAKAIALGADIAGLALPVIRAYTVGDLDGVIGLLER
IGMEFKAALFLTGASSLAEARRLPLIVSPELESRLQARGVKLDLYLNGARLLFKPGETCSNWA
>Mature_383_residues
MQTKTRKLDHIRITVDSDVEHPGKITLLEHVELVHRALPETALSSIDTSIEFLGKQLSMPLMVTGMTGGHPVAARINCVI
ARAAARLGIAIGVGSQRAAIEDPSLEYTFRVARDCAREEGGDVVLVANLGAAQLVAGYGVEHVRRAIEMIDADAVAIHVN
AAQEAFQPEGDVDFRNAIDLVAEVARELDKPVIVKETGHGLGYEVVYVLRGRGIRFFDVSGAGGTSWVRVEYFRARIRGL
QGLAEAAKTFSSWGIPTAQAVVETRWAAPDSCIIASGGVRTGLDAAKAIALGADIAGLALPVIRAYTVGDLDGVIGLLER
IGMEFKAALFLTGASSLAEARRLPLIVSPELESRLQARGVKLDLYLNGARLLFKPGETCSNWA

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 40923; Mature: 40923

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTKTRKLDHIRITVDSDVEHPGKITLLEHVELVHRALPETALSSIDTSIEFLGKQLSMP
CCCCCCCCEEEEEEEECCCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
LMVTGMTGGHPVAARINCVIARAAARLGIAIGVGSQRAAIEDPSLEYTFRVARDCAREEG
EEEEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC
GDVVLVANLGAAQLVAGYGVEHVRRAIEMIDADAVAIHVNAAQEAFQPEGDVDFRNAIDL
CCEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECHHHHCCCCCCCCHHHHHHH
VAEVARELDKPVIVKETGHGLGYEVVYVLRGRGIRFFDVSGAGGTSWVRVEYFRARIRGL
HHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCEEEEECCCCCCCCEEEHHHHHHHHHHH
QGLAEAAKTFSSWGIPTAQAVVETRWAAPDSCIIASGGVRTGLDAAKAIALGADIAGLAL
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHH
PVIRAYTVGDLDGVIGLLERIGMEFKAALFLTGASSLAEARRLPLIVSPELESRLQARGV
HHHHHHCCCCHHHHHHHHHHHCCHHEEEEEEECCHHHHHHHCCCEEECCCHHHHHHHCCE
KLDLYLNGARLLFKPGETCSNWA
EEEEEECCEEEEECCCCCCCCCC
>Mature Secondary Structure
MQTKTRKLDHIRITVDSDVEHPGKITLLEHVELVHRALPETALSSIDTSIEFLGKQLSMP
CCCCCCCCEEEEEEEECCCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
LMVTGMTGGHPVAARINCVIARAAARLGIAIGVGSQRAAIEDPSLEYTFRVARDCAREEG
EEEEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC
GDVVLVANLGAAQLVAGYGVEHVRRAIEMIDADAVAIHVNAAQEAFQPEGDVDFRNAIDL
CCEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECHHHHCCCCCCCCHHHHHHH
VAEVARELDKPVIVKETGHGLGYEVVYVLRGRGIRFFDVSGAGGTSWVRVEYFRARIRGL
HHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCEEEEECCCCCCCCEEEHHHHHHHHHHH
QGLAEAAKTFSSWGIPTAQAVVETRWAAPDSCIIASGGVRTGLDAAKAIALGADIAGLAL
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHH
PVIRAYTVGDLDGVIGLLERIGMEFKAALFLTGASSLAEARRLPLIVSPELESRLQARGV
HHHHHHCCCCHHHHHHHHHHHCCHHEEEEEEECCHHHHHHHCCCEEECCCHHHHHHHCCE
KLDLYLNGARLLFKPGETCSNWA
EEEEEECCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA