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The map label for this gene is rpl18e [H]

Identifier: 124027416

GI number: 124027416

Start: 513647

End: 514018

Strand: Direct

Name: rpl18e [H]

Synonym: Hbut_0531

Alternate gene names: 124027416

Gene position: 513647-514018 (Clockwise)

Preceding gene: 124027415

Following gene: 124027417

Centisome position: 30.81

GC content: 52.42

Gene sequence:

>372_bases
GTGCAGACCACGAAGAGGACGGGGCCAACAAACATACTCGTAAGAATGACGATACGTAAGCTACGCAGTGCAGCCCACAG
AAACAAGGCGCCAATATGGAGGTATGTAGCGGAGCTTATCGAAAGGCCCCGAAGGCTGAGAATAGTAGTCAATGTGAGTA
AGATTAACCGCTACACAGAGCCCGGAGACGTCGTTGTCGTACCAGGCAAGGTTCTCGGTGCCGGCAGCATAGACCATCCT
GTAACTGTGGCAGCTCTAGGTTTTAGCGAGGAGGCAGCCCGGAAGATAGTCTCTGCTGGCGGCAGGATAATGCACATACT
ACAGCTCATCGAGGAGAATCCGCGCGGCAGCAAGGTCAAAATTATAATCTAG

Upstream 100 bases:

>100_bases
ATATTGTGCGGGAGGCTGCTAGAGCTATTGTGAGGAAGGCTGAAAACCTACTCTCCCAGCTAGCTGAGCTACGCCGGGAG
CAAGGTTAGGGTGAGCAGCG

Downstream 100 bases:

>100_bases
CCTCCCGTCATGGTGTGGGCTGGGGTGTACGGTTATGGGCACGGTTAAGGTTGTAGCGCCAAAGCCTCCGGAGAGGGTCC
TCTACGTGGATGCTACTGAC

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MQTTKRTGPTNILVRMTIRKLRSAAHRNKAPIWRYVAELIERPRRLRIVVNVSKINRYTEPGDVVVVPGKVLGAGSIDHP
VTVAALGFSEEAARKIVSAGGRIMHILQLIEENPRGSKVKIII

Sequences:

>Translated_123_residues
MQTTKRTGPTNILVRMTIRKLRSAAHRNKAPIWRYVAELIERPRRLRIVVNVSKINRYTEPGDVVVVPGKVLGAGSIDHP
VTVAALGFSEEAARKIVSAGGRIMHILQLIEENPRGSKVKIII
>Mature_123_residues
MQTTKRTGPTNILVRMTIRKLRSAAHRNKAPIWRYVAELIERPRRLRIVVNVSKINRYTEPGDVVVVPGKVLGAGSIDHP
VTVAALGFSEEAARKIVSAGGRIMHILQLIEENPRGSKVKIII

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000039
- InterPro:   IPR021131
- InterPro:   IPR022947
- InterPro:   IPR021132 [H]

Pfam domain/function: PF00828 Ribosomal_L18e [H]

EC number: NA

Molecular weight: Translated: 13667; Mature: 13667

Theoretical pI: Translated: 11.87; Mature: 11.87

Prosite motif: PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTKRTGPTNILVRMTIRKLRSAAHRNKAPIWRYVAELIERPRRLRIVVNVSKINRYTE
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEHHHHCCCCC
PGDVVVVPGKVLGAGSIDHPVTVAALGFSEEAARKIVSAGGRIMHILQLIEENPRGSKVK
CCCEEEECCCEECCCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEE
III
EEC
>Mature Secondary Structure
MQTTKRTGPTNILVRMTIRKLRSAAHRNKAPIWRYVAELIERPRRLRIVVNVSKINRYTE
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEHHHHCCCCC
PGDVVVVPGKVLGAGSIDHPVTVAALGFSEEAARKIVSAGGRIMHILQLIEENPRGSKVK
CCCEEEECCCEECCCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEE
III
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA