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The map label for this gene is 124027364

Identifier: 124027364

GI number: 124027364

Start: 454742

End: 455410

Strand: Reverse

Name: 124027364

Synonym: Hbut_0476

Alternate gene names: NA

Gene position: 455410-454742 (Counterclockwise)

Preceding gene: 124027365

Following gene: 124027362

Centisome position: 27.32

GC content: 51.12

Gene sequence:

>669_bases
ATGAGTGATAAGCCTGGCCTGGCGCTGCGTAAGTGGCGTGAAATATTTGCAGCTAGCCAGGTGGAAGTTGCACGACACAT
GGGTGTCACATCAAGCGTTATTAGCGACTATGAGAAGGGGCGTCGCCAGCCCGGTTCGTTGTTCGTTAAGAGGTTTGTTG
AGGCGCTCCTTGAGATTGATAGTGAACGGGGAAGCCCGGTTACACGACGGCTTGCCAGGATACTACAGCTCCACTATCTT
GGCGCAGTCATAGACATGAGAGACTTCGAGGCCGGTATACCATTAGATGCTGTTATAAATGCAGTGCAGGGTGTACCCGT
TAACTCCTACATCCCCCAGGAGCTACTCTACGGCTATACCGTAATCGATAGTGTGCGCGCGATAATGATGCTTTCCGGTA
ATGAGTTCCTATACTTGCTAGGCTCTACGACACAGCGTGTTGTCGTGTTCACAAAAGTTACCACGGGACGTAGCCCGATG
ATAGCACTTAGGGTTTCAACAATAAAGCCTGCAGCAATAGTACTCCATGGCCCAAAGAGGCTTGACCCGCTTGCGATCTG
GATAGCTGAGAGCGAGAATGTACCGGTGGTGCTTAGCATGTGCAGCTCTGTAGAGGAGCTGGTTAAGAGGCTCCAGAAGC
TTTCTTCCTCTCCTCAAGGAGTAGGATAG

Upstream 100 bases:

>100_bases
TCCGTGGCGTGGTGGTTTGCTGTCGAGCGTTGATGATGTTTTGTGGCCTTCGAGGATTGTTCTGAGGCGTATTGCGCAAC
ACATTGCTGGCGATATTGTT

Downstream 100 bases:

>100_bases
CAGCTGCTATATCGCCACCAACCTCCTCAAGTGCTCTCCTAGCCTCCTCAAGGCTGACGCCTGCTTGTTCAGCGACAAGC
CTTACATCCTCTTCGCTAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSDKPGLALRKWREIFAASQVEVARHMGVTSSVISDYEKGRRQPGSLFVKRFVEALLEIDSERGSPVTRRLARILQLHYL
GAVIDMRDFEAGIPLDAVINAVQGVPVNSYIPQELLYGYTVIDSVRAIMMLSGNEFLYLLGSTTQRVVVFTKVTTGRSPM
IALRVSTIKPAAIVLHGPKRLDPLAIWIAESENVPVVLSMCSSVEELVKRLQKLSSSPQGVG

Sequences:

>Translated_222_residues
MSDKPGLALRKWREIFAASQVEVARHMGVTSSVISDYEKGRRQPGSLFVKRFVEALLEIDSERGSPVTRRLARILQLHYL
GAVIDMRDFEAGIPLDAVINAVQGVPVNSYIPQELLYGYTVIDSVRAIMMLSGNEFLYLLGSTTQRVVVFTKVTTGRSPM
IALRVSTIKPAAIVLHGPKRLDPLAIWIAESENVPVVLSMCSSVEELVKRLQKLSSSPQGVG
>Mature_221_residues
SDKPGLALRKWREIFAASQVEVARHMGVTSSVISDYEKGRRQPGSLFVKRFVEALLEIDSERGSPVTRRLARILQLHYLG
AVIDMRDFEAGIPLDAVINAVQGVPVNSYIPQELLYGYTVIDSVRAIMMLSGNEFLYLLGSTTQRVVVFTKVTTGRSPMI
ALRVSTIKPAAIVLHGPKRLDPLAIWIAESENVPVVLSMCSSVEELVKRLQKLSSSPQGVG

Specific function: Unknown

COG id: COG1709

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR017271
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 24463; Mature: 24332

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKPGLALRKWREIFAASQVEVARHMGVTSSVISDYEKGRRQPGSLFVKRFVEALLEID
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
SERGSPVTRRLARILQLHYLGAVIDMRDFEAGIPLDAVINAVQGVPVNSYIPQELLYGYT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
VIDSVRAIMMLSGNEFLYLLGSTTQRVVVFTKVTTGRSPMIALRVSTIKPAAIVLHGPKR
HHHHHHHHHEECCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCC
LDPLAIWIAESENVPVVLSMCSSVEELVKRLQKLSSSPQGVG
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SDKPGLALRKWREIFAASQVEVARHMGVTSSVISDYEKGRRQPGSLFVKRFVEALLEID
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
SERGSPVTRRLARILQLHYLGAVIDMRDFEAGIPLDAVINAVQGVPVNSYIPQELLYGYT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
VIDSVRAIMMLSGNEFLYLLGSTTQRVVVFTKVTTGRSPMIALRVSTIKPAAIVLHGPKR
HHHHHHHHHEECCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCC
LDPLAIWIAESENVPVVLSMCSSVEELVKRLQKLSSSPQGVG
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]