| Definition | Hyperthermus butylicus DSM 5456 chromosome, complete genome. |
|---|---|
| Accession | NC_008818 |
| Length | 1,667,163 |
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The map label for this gene is ycbN [H]
Identifier: 124027156
GI number: 124027156
Start: 246774
End: 247721
Strand: Direct
Name: ycbN [H]
Synonym: Hbut_0259
Alternate gene names: 124027156
Gene position: 246774-247721 (Clockwise)
Preceding gene: 124027155
Following gene: 124027158
Centisome position: 14.8
GC content: 61.5
Gene sequence:
>948_bases TTGCCCGTGGTACTCGAGGTTCGCGGCCTGATTAAGCGGTATGGCCGCTTTGTCGCGGTTTCTGGTGTGGGCTTCTCGGT TGCCCGTGGCGTTCACGGGCTTGTGGGGCCTAACGGTGCCGGGAAGACCACAACTATGAAGTGTATTGTCGGCCTGGCAG TTCCCGATGCCGGGGACATAGTCTTCCTTGGCGAGAGCCTCCTAGCCCGGGGAGCTCACCGGCTGCGTAAGCTGATGGGC TACGTGGCCGAGATGCCGGTGCTTCCGGAGAACTATACTGCTGAGGAGTTGCTCGTGGAGCTAGCCATGTTGGAGGGCTT GTCTAGGAGTGACGCGTTGAGGGAGGCCCGTAGGGCGCTGGAGGAGGTTGGCCTCTGGGAGGCTAGGAGGCTCCGAGTCA AGGCGATGAGTAAGGGTATGAGGAAGAGGCTCTACGTTGCCCAGGCCATCCTGCAGCCGAGAGAGCTCTACGTGCTAGAC GAGCCGTTCACCGGCCTCGACCCGGAGGGTGTCGCAGAGCTCCGCCAGCTAGCAACAAGGCTCGGCAGGGATGCAGGCGT GCTCCTTAGCAGCCACCTGCTGAGAGAGATGGAGGATCTAGCCACGGAGGTCACGGTGATCTACCGGGGCAGCGTAGTCT ACACAGGCTCCCTCGACCAGCTACGCTCCAGGATAGGTGGCGGGGTGGTACTCGAAGTGGAGGTTGATGATGTCGCCCGG GCTGCCAAGCTGCTAGCCTCGAAGGGGTATAAGACAAGCACCTACGCGGGCCGTGTCAAGCTGAGGCTAGGTTCCCGCGA GGAGGCAGCAGAAGCCATAGCAGCACTTGTTGAGGGTGGTGTAAAGGTGTACTCGGCTGTGAGGAGGACACTGAGCCTAG AGGAGGCCTACATAGCGCTCATCGTGGGCAAATCGTCTCAAGTGCTGTCCTCGCCGCGCGCGGCGTAA
Upstream 100 bases:
>100_bases ATTGATCTGGCTTGTTCAGCTCCTGGCGAGGTGGCGTAGGAGGGCTACCAGCTAAATGAGGCCCACACCCCGCCCAGGAG CTTCTGGGGCTTGAGCTGGA
Downstream 100 bases:
>100_bases CAAGCTCCAGGAGCCTAGCCATACCCCTCTCCAGCTCCTCGGCCTCGACAATGGCTGCACCGCCAGCAGGTATTACGACA TCCCCACCACCGATAAGGGC
Product: ABC transporter, ATP binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MPVVLEVRGLIKRYGRFVAVSGVGFSVARGVHGLVGPNGAGKTTTMKCIVGLAVPDAGDIVFLGESLLARGAHRLRKLMG YVAEMPVLPENYTAEELLVELAMLEGLSRSDALREARRALEEVGLWEARRLRVKAMSKGMRKRLYVAQAILQPRELYVLD EPFTGLDPEGVAELRQLATRLGRDAGVLLSSHLLREMEDLATEVTVIYRGSVVYTGSLDQLRSRIGGGVVLEVEVDDVAR AAKLLASKGYKTSTYAGRVKLRLGSREEAAEAIAALVEGGVKVYSAVRRTLSLEEAYIALIVGKSSQVLSSPRAA
Sequences:
>Translated_315_residues MPVVLEVRGLIKRYGRFVAVSGVGFSVARGVHGLVGPNGAGKTTTMKCIVGLAVPDAGDIVFLGESLLARGAHRLRKLMG YVAEMPVLPENYTAEELLVELAMLEGLSRSDALREARRALEEVGLWEARRLRVKAMSKGMRKRLYVAQAILQPRELYVLD EPFTGLDPEGVAELRQLATRLGRDAGVLLSSHLLREMEDLATEVTVIYRGSVVYTGSLDQLRSRIGGGVVLEVEVDDVAR AAKLLASKGYKTSTYAGRVKLRLGSREEAAEAIAALVEGGVKVYSAVRRTLSLEEAYIALIVGKSSQVLSSPRAA >Mature_314_residues PVVLEVRGLIKRYGRFVAVSGVGFSVARGVHGLVGPNGAGKTTTMKCIVGLAVPDAGDIVFLGESLLARGAHRLRKLMGY VAEMPVLPENYTAEELLVELAMLEGLSRSDALREARRALEEVGLWEARRLRVKAMSKGMRKRLYVAQAILQPRELYVLDE PFTGLDPEGVAELRQLATRLGRDAGVLLSSHLLREMEDLATEVTVIYRGSVVYTGSLDQLRSRIGGGVVLEVEVDDVARA AKLLASKGYKTSTYAGRVKLRLGSREEAAEAIAALVEGGVKVYSAVRRTLSLEEAYIALIVGKSSQVLSSPRAA
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI153792144, Length=231, Percent_Identity=32.9004329004329, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI27477115, Length=232, Percent_Identity=32.3275862068966, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI6005701, Length=242, Percent_Identity=31.404958677686, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI27436953, Length=226, Percent_Identity=29.2035398230088, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI27881501, Length=231, Percent_Identity=30.3030303030303, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI30795238, Length=231, Percent_Identity=30.3030303030303, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI27262624, Length=233, Percent_Identity=30.9012875536481, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI27262626, Length=233, Percent_Identity=30.9012875536481, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI21536376, Length=241, Percent_Identity=31.9502074688797, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI105990541, Length=204, Percent_Identity=29.9019607843137, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI116734710, Length=195, Percent_Identity=30.2564102564103, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI45446740, Length=306, Percent_Identity=28.1045751633987, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI47078218, Length=306, Percent_Identity=28.1045751633987, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI150417984, Length=235, Percent_Identity=33.1914893617021, Blast_Score=93, Evalue=4e-19, Organism=Homo sapiens, GI31657092, Length=247, Percent_Identity=28.7449392712551, Blast_Score=86, Evalue=6e-17, Organism=Escherichia coli, GI87081782, Length=224, Percent_Identity=30.8035714285714, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1786319, Length=318, Percent_Identity=28.6163522012579, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1789864, Length=240, Percent_Identity=28.3333333333333, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI48994943, Length=243, Percent_Identity=27.5720164609054, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1790162, Length=235, Percent_Identity=25.1063829787234, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1789593, Length=220, Percent_Identity=31.3636363636364, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=28.8990825688073, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=26.3392857142857, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788472, Length=229, Percent_Identity=25.764192139738, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994883, Length=220, Percent_Identity=29.5454545454545, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786803, Length=211, Percent_Identity=24.1706161137441, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI145693107, Length=237, Percent_Identity=27.8481012658228, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI87081709, Length=222, Percent_Identity=27.4774774774775, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI48995001, Length=217, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787792, Length=229, Percent_Identity=25.764192139738, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87081834, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789962, Length=213, Percent_Identity=28.6384976525822, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1790190, Length=220, Percent_Identity=25.9090909090909, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=24.6575342465753, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789586, Length=239, Percent_Identity=27.6150627615063, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790739, Length=228, Percent_Identity=27.1929824561404, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788506, Length=199, Percent_Identity=34.1708542713568, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790544, Length=244, Percent_Identity=24.5901639344262, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789672, Length=215, Percent_Identity=26.046511627907, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI87082064, Length=195, Percent_Identity=29.7435897435897, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=25.3275109170306, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1788761, Length=236, Percent_Identity=26.6949152542373, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=25.5144032921811, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788210, Length=217, Percent_Identity=27.6497695852535, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI2367384, Length=203, Percent_Identity=29.064039408867, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789873, Length=181, Percent_Identity=30.3867403314917, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787759, Length=220, Percent_Identity=29.0909090909091, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17565586, Length=257, Percent_Identity=30.3501945525292, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71983510, Length=234, Percent_Identity=29.9145299145299, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI71983516, Length=234, Percent_Identity=29.9145299145299, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI71983523, Length=234, Percent_Identity=29.9145299145299, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17510237, Length=252, Percent_Identity=29.7619047619048, Blast_Score=101, Evalue=7e-22, Organism=Caenorhabditis elegans, GI115533608, Length=272, Percent_Identity=30.1470588235294, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI28574150, Length=204, Percent_Identity=33.8235294117647, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI116007328, Length=204, Percent_Identity=33.8235294117647, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24643674, Length=275, Percent_Identity=29.4545454545455, Blast_Score=108, Evalue=6e-24, Organism=Drosophila melanogaster, GI24666092, Length=231, Percent_Identity=28.1385281385281, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI221512771, Length=235, Percent_Identity=31.063829787234, Blast_Score=89, Evalue=5e-18, Organism=Drosophila melanogaster, GI24648314, Length=219, Percent_Identity=25.5707762557078, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI28573573, Length=245, Percent_Identity=30.2040816326531, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI28573571, Length=245, Percent_Identity=30.2040816326531, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24650853, Length=200, Percent_Identity=29.5, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24650855, Length=200, Percent_Identity=29.5, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI281362751, Length=206, Percent_Identity=29.126213592233, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24582014, Length=200, Percent_Identity=31, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24582012, Length=200, Percent_Identity=31, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI116007184, Length=223, Percent_Identity=31.8385650224215, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI221500365, Length=223, Percent_Identity=31.8385650224215, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI85725262, Length=183, Percent_Identity=30.0546448087432, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28571209, Length=220, Percent_Identity=23.6363636363636, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI45552199, Length=209, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 34045; Mature: 33914
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVVLEVRGLIKRYGRFVAVSGVGFSVARGVHGLVGPNGAGKTTTMKCIVGLAVPDAGDI CCEEEHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHEEEEECCCCCCE VFLGESLLARGAHRLRKLMGYVAEMPVLPENYTAEELLVELAMLEGLSRSDALREARRAL EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH EEVGLWEARRLRVKAMSKGMRKRLYVAQAILQPRELYVLDEPFTGLDPEGVAELRQLATR HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH LGRDAGVLLSSHLLREMEDLATEVTVIYRGSVVYTGSLDQLRSRIGGGVVLEVEVDDVAR HCCCHHHHHHHHHHHHHHHHHHHEEEEEECCEEEECCHHHHHHHHCCCEEEEEEHHHHHH AAKLLASKGYKTSTYAGRVKLRLGSREEAAEAIAALVEGGVKVYSAVRRTLSLEEAYIAL HHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE IVGKSSQVLSSPRAA EECCCHHHHCCCCCC >Mature Secondary Structure PVVLEVRGLIKRYGRFVAVSGVGFSVARGVHGLVGPNGAGKTTTMKCIVGLAVPDAGDI CEEEHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHEEEEECCCCCCE VFLGESLLARGAHRLRKLMGYVAEMPVLPENYTAEELLVELAMLEGLSRSDALREARRAL EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH EEVGLWEARRLRVKAMSKGMRKRLYVAQAILQPRELYVLDEPFTGLDPEGVAELRQLATR HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH LGRDAGVLLSSHLLREMEDLATEVTVIYRGSVVYTGSLDQLRSRIGGGVVLEVEVDDVAR HCCCHHHHHHHHHHHHHHHHHHHEEEEEECCEEEECCHHHHHHHHCCCEEEEEEHHHHHH AAKLLASKGYKTSTYAGRVKLRLGSREEAAEAIAALVEGGVKVYSAVRRTLSLEEAYIAL HHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE IVGKSSQVLSSPRAA EECCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 7704254 [H]