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The map label for this gene is hofB [C]

Identifier: 124027110

GI number: 124027110

Start: 194642

End: 196264

Strand: Reverse

Name: hofB [C]

Synonym: Hbut_0213

Alternate gene names: 124027110

Gene position: 196264-194642 (Counterclockwise)

Preceding gene: 124027111

Following gene: 124027109

Centisome position: 11.77

GC content: 55.51

Gene sequence:

>1623_bases
ATGGCTGCCCGGCATGAAGGTAGAGCAGGCGTCAACAACGATAGAATCGATGCTGCCTTAGAGAATATTGATAGCGTGGG
GGGTACAGGTGAAAAGCTACGTATTCTTAGGGAGTATAGTTTACTCGAAGAGCCTCGTGTTGCCGTCTCTATTGTCGAGG
ATGAGGATGGTAGGAGGTTCTATAACGTCTTTGAGCCTAAGCTAAGCGATATTGGTCGAAGGATTCTCGACCGGCTGCGT
AGCAAGATTATTGGTGATCTTCGGCTTTTGAAGCTTTTCTCGGAGCTGACTGATCTTGGTGAGGGTTTGAGGGAGGCTTA
CCGGCTTGCCCGTCGGCTGGTGATGTGGCATCGTAAGGAGCTGAGGAAGCTTAGGCGTGACCCGGAGCAGGAGGCGCTTG
GTGTTGCCTACTATATTGCGCGGGACCTGGTTGGCTATGGTCGTATCGACCCGCTGATAAGGGATCCCTACATCGAGGAT
ATCTCGTGTAACGGGCTCCTATCCCCCGTATTCGTCTACCACACAGAGTTCGAGTGGCTCACGACTGGTATCACGTTTGA
GAGCACTGAGGAGCTAGAGCATGTTGTTATGAAGCTTGCGCTCCGCAGTGGTCAGGAGCCCAGCCTTGCCCGGCCCGTTG
TTGAGGGTGTATTGAAGCCTGAGGGTTACCGTGTCCACATAGTGCTTGATGTTGTCTCTAGGCGTGGCCACAGCTTTACG
GTGCGTAAGTTCCGCGCCGAGCCGTTCACGATAACCGAGCTTATCCGCCGCGGCACACTAGACCCCGGCGTGGCTGCTAT
GCTGTGGGCTGCGATACAGTACAAGCAGGGCGTTATCATCTACGGGCCCATTGGTGCTGGCAAGACGACACTGCTCAACG
CGCTGGCTATGCTGTTGCCGCCGGAGTACAAGGTAGTCACGATCGAGGATACGCCCGAGATCAGCATACCTTTCCACGAT
AACTGGACCGCTATGCATACGAGGCTCTCCGACCAGCCTGGCGTGCAGAATATTACGTTGCAGGCGCAGGTCGAGAGCGC
GCTACGCATGAGGCCGGACGTGATAATATTGGGTGAGATTCGTAGCAGGGAGGCCTACGCGTTCTTCCAGGCTCTCGCCA
CGGGCCACGGTGGCATAACAACCGTGCATGCTGAATCGGCGGACGTGCTTATCCGGAGGCTCGCCAGCCCGCCTATGAAC
GTGCCTAAGAGCATTATTGCTGCTGCCAAGCTCTACGTGCATATGCTCCGTATCGAGAGGAGGGGCCATGTCTACCGTAA
GGTTATAAAGGTAGATGAGGCGAGGGACTACGATCCCGTCCGGGACGAGGTTGAGATAGGTAGGCTTATCGTCTGGGATA
GCCATAATGATGTGTGGAGGCTCGTGGTTGAGGAGAGCAGCTTTGTTAACGCTATCGCTGACCTATTGCTGGCTAAGCCT
AGTGAGGTGTGGAAAGATATAGAGATGAGGGCTACGGTGCTTAAATGGGCTGCTGAGCGTGGTGCCGACGTGCTGGAACT
GCACGAGATTGTGCGTAGGTACATGAGGGAGCCCGAGAAGGTGTATGTGGAGGCGCTCTCGGAGACCAAGCCCTACACGT
TCGCCGCCGGCCTGGGTGTCTAG

Upstream 100 bases:

>100_bases
ATTATCAAATAACTGTAAACGGTGAGTACTTCGTACTCGGTGGTGAGTATACATAGTTAAAAGTTGTAATATCAATCTGG
CCGTGTAGGGTTGTTGATGC

Downstream 100 bases:

>100_bases
GCCTTGAGTGTTGTGGAGGCTTTTGCAGCGCTAGGCGAGAAGCTGGATCCGCTGCTGAGGTACCACGTTGTCGGAAGCGG
CATAGCATCGAGCTTCGAGA

Product: TypeII/TypeIV secretory system protein, ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MAARHEGRAGVNNDRIDAALENIDSVGGTGEKLRILREYSLLEEPRVAVSIVEDEDGRRFYNVFEPKLSDIGRRILDRLR
SKIIGDLRLLKLFSELTDLGEGLREAYRLARRLVMWHRKELRKLRRDPEQEALGVAYYIARDLVGYGRIDPLIRDPYIED
ISCNGLLSPVFVYHTEFEWLTTGITFESTEELEHVVMKLALRSGQEPSLARPVVEGVLKPEGYRVHIVLDVVSRRGHSFT
VRKFRAEPFTITELIRRGTLDPGVAAMLWAAIQYKQGVIIYGPIGAGKTTLLNALAMLLPPEYKVVTIEDTPEISIPFHD
NWTAMHTRLSDQPGVQNITLQAQVESALRMRPDVIILGEIRSREAYAFFQALATGHGGITTVHAESADVLIRRLASPPMN
VPKSIIAAAKLYVHMLRIERRGHVYRKVIKVDEARDYDPVRDEVEIGRLIVWDSHNDVWRLVVEESSFVNAIADLLLAKP
SEVWKDIEMRATVLKWAAERGADVLELHEIVRRYMREPEKVYVEALSETKPYTFAAGLGV

Sequences:

>Translated_540_residues
MAARHEGRAGVNNDRIDAALENIDSVGGTGEKLRILREYSLLEEPRVAVSIVEDEDGRRFYNVFEPKLSDIGRRILDRLR
SKIIGDLRLLKLFSELTDLGEGLREAYRLARRLVMWHRKELRKLRRDPEQEALGVAYYIARDLVGYGRIDPLIRDPYIED
ISCNGLLSPVFVYHTEFEWLTTGITFESTEELEHVVMKLALRSGQEPSLARPVVEGVLKPEGYRVHIVLDVVSRRGHSFT
VRKFRAEPFTITELIRRGTLDPGVAAMLWAAIQYKQGVIIYGPIGAGKTTLLNALAMLLPPEYKVVTIEDTPEISIPFHD
NWTAMHTRLSDQPGVQNITLQAQVESALRMRPDVIILGEIRSREAYAFFQALATGHGGITTVHAESADVLIRRLASPPMN
VPKSIIAAAKLYVHMLRIERRGHVYRKVIKVDEARDYDPVRDEVEIGRLIVWDSHNDVWRLVVEESSFVNAIADLLLAKP
SEVWKDIEMRATVLKWAAERGADVLELHEIVRRYMREPEKVYVEALSETKPYTFAAGLGV
>Mature_539_residues
AARHEGRAGVNNDRIDAALENIDSVGGTGEKLRILREYSLLEEPRVAVSIVEDEDGRRFYNVFEPKLSDIGRRILDRLRS
KIIGDLRLLKLFSELTDLGEGLREAYRLARRLVMWHRKELRKLRRDPEQEALGVAYYIARDLVGYGRIDPLIRDPYIEDI
SCNGLLSPVFVYHTEFEWLTTGITFESTEELEHVVMKLALRSGQEPSLARPVVEGVLKPEGYRVHIVLDVVSRRGHSFTV
RKFRAEPFTITELIRRGTLDPGVAAMLWAAIQYKQGVIIYGPIGAGKTTLLNALAMLLPPEYKVVTIEDTPEISIPFHDN
WTAMHTRLSDQPGVQNITLQAQVESALRMRPDVIILGEIRSREAYAFFQALATGHGGITTVHAESADVLIRRLASPPMNV
PKSIIAAAKLYVHMLRIERRGHVYRKVIKVDEARDYDPVRDEVEIGRLIVWDSHNDVWRLVVEESSFVNAIADLLLAKPS
EVWKDIEMRATVLKWAAERGADVLELHEIVRRYMREPEKVYVEALSETKPYTFAAGLGV

Specific function: Unknown

COG id: COG0630

COG function: function code NU; Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=198, Percent_Identity=29.7979797979798, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 61354; Mature: 61222

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARHEGRAGVNNDRIDAALENIDSVGGTGEKLRILREYSLLEEPRVAVSIVEDEDGRRF
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCH
YNVFEPKLSDIGRRILDRLRSKIIGDLRLLKLFSELTDLGEGLREAYRLARRLVMWHRKE
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRKLRRDPEQEALGVAYYIARDLVGYGRIDPLIRDPYIEDISCNGLLSPVFVYHTEFEWL
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCEEE
TTGITFESTEELEHVVMKLALRSGQEPSLARPVVEGVLKPEGYRVHIVLDVVSRRGHSFT
EECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEEEHHCCCCEEE
VRKFRAEPFTITELIRRGTLDPGVAAMLWAAIQYKQGVIIYGPIGAGKTTLLNALAMLLP
EEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC
PEYKVVTIEDTPEISIPFHDNWTAMHTRLSDQPGVQNITLQAQVESALRMRPDVIILGEI
CCEEEEEEECCCCEEECCCCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHCCCCEEEEECC
RSREAYAFFQALATGHGGITTVHAESADVLIRRLASPPMNVPKSIIAAAKLYVHMLRIER
CCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
RGHVYRKVIKVDEARDYDPVRDEVEIGRLIVWDSHNDVWRLVVEESSFVNAIADLLLAKP
HHHHHHHHHHHCCCCCCCCCCCHHCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCC
SEVWKDIEMRATVLKWAAERGADVLELHEIVRRYMREPEKVYVEALSETKPYTFAAGLGV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCC
>Mature Secondary Structure 
AARHEGRAGVNNDRIDAALENIDSVGGTGEKLRILREYSLLEEPRVAVSIVEDEDGRRF
CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCH
YNVFEPKLSDIGRRILDRLRSKIIGDLRLLKLFSELTDLGEGLREAYRLARRLVMWHRKE
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRKLRRDPEQEALGVAYYIARDLVGYGRIDPLIRDPYIEDISCNGLLSPVFVYHTEFEWL
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCEEE
TTGITFESTEELEHVVMKLALRSGQEPSLARPVVEGVLKPEGYRVHIVLDVVSRRGHSFT
EECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEEEHHCCCCEEE
VRKFRAEPFTITELIRRGTLDPGVAAMLWAAIQYKQGVIIYGPIGAGKTTLLNALAMLLP
EEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC
PEYKVVTIEDTPEISIPFHDNWTAMHTRLSDQPGVQNITLQAQVESALRMRPDVIILGEI
CCEEEEEEECCCCEEECCCCCCHHHHHCCCCCCCCCEEEEHHHHHHHHHCCCCEEEEECC
RSREAYAFFQALATGHGGITTVHAESADVLIRRLASPPMNVPKSIIAAAKLYVHMLRIER
CCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
RGHVYRKVIKVDEARDYDPVRDEVEIGRLIVWDSHNDVWRLVVEESSFVNAIADLLLAKP
HHHHHHHHHHHCCCCCCCCCCCHHCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCC
SEVWKDIEMRATVLKWAAERGADVLELHEIVRRYMREPEKVYVEALSETKPYTFAAGLGV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]