Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 124027093

GI number: 124027093

Start: 178078

End: 178677

Strand: Reverse

Name: ymdB [C]

Synonym: Hbut_0196

Alternate gene names: 124027093

Gene position: 178677-178078 (Counterclockwise)

Preceding gene: 124027094

Following gene: 124027092

Centisome position: 10.72

GC content: 62.5

Gene sequence:

>600_bases
TTGCCGCTCGAAAAGCTAGCCGAGTACAGGTGTAACGGTGTCGTGGTCGAGATAGCCCGTGGTGATATCACTGAGGCCGA
GTGCGAGGCCGTGGTGAACCCGGCTAACAGCCTCATGATAATGGGCGGTGGTGTCGCGGGCGCGCTGCGCCGCGCTGCCG
GGCCCGAGGTCGAGGAGGAGGCTAGGCGCAAGGCCCCCGTGCCGGTGGGCGAGGCTATACACACGGGTGCTGGTAGGCTA
GAGCCCAGGATCAAGTATATCATCCATGCTCCCACTATGGAGAGGCCCGCGATGAGAACCACGCAGGGCAAGGTTGTGAA
GGCTGTGCTGGCGGCGCTTAGGGAGGCGGAGAAGCTCAACGTGGGCTGCCTAGCCCTCCCAGCTATGGGTGCTGGGGTTG
GGGGTCTCACCGCGAGGGAGAGCCTAGAAGCCATAATGGAGGCCCTGGACGAGTTCCTGGGCTCCGGCGGGAAGCTGCCC
CCACGGATAATCCTTGTAGCCTACAGCGAGCGTGACGCTAAGCAGTTCCTAGACGAGATAAAACGGGTCAAAACGAGGAA
CTGCAAGCTAGCCCCGGTGGGCGGTGAGACAAGAGCTTGA

Upstream 100 bases:

>100_bases
CTCCGGGCCACTGTGAGCGGATACTCTGGTGGGCTAGCCAGCTGCTAGAGACTGTTAAGAGCCGAACACATGGCTAGACT
AGGGATACGGTGCGGGAGGC

Downstream 100 bases:

>100_bases
GAATGCTCAGCCTAAGACTACTCTTTCCCCTCCTAGCCATAGTCCTAGCCATAACTGTTCTCGCAGCCTATACGCACCAT
GACGAAGGGGGAGGGATAGA

Product: A1pp, Appr-1-p processing enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MPLEKLAEYRCNGVVVEIARGDITEAECEAVVNPANSLMIMGGGVAGALRRAAGPEVEEEARRKAPVPVGEAIHTGAGRL
EPRIKYIIHAPTMERPAMRTTQGKVVKAVLAALREAEKLNVGCLALPAMGAGVGGLTARESLEAIMEALDEFLGSGGKLP
PRIILVAYSERDAKQFLDEIKRVKTRNCKLAPVGGETRA

Sequences:

>Translated_199_residues
MPLEKLAEYRCNGVVVEIARGDITEAECEAVVNPANSLMIMGGGVAGALRRAAGPEVEEEARRKAPVPVGEAIHTGAGRL
EPRIKYIIHAPTMERPAMRTTQGKVVKAVLAALREAEKLNVGCLALPAMGAGVGGLTARESLEAIMEALDEFLGSGGKLP
PRIILVAYSERDAKQFLDEIKRVKTRNCKLAPVGGETRA
>Mature_198_residues
PLEKLAEYRCNGVVVEIARGDITEAECEAVVNPANSLMIMGGGVAGALRRAAGPEVEEEARRKAPVPVGEAIHTGAGRLE
PRIKYIIHAPTMERPAMRTTQGKVVKAVLAALREAEKLNVGCLALPAMGAGVGGLTARESLEAIMEALDEFLGSGGKLPP
RIILVAYSERDAKQFLDEIKRVKTRNCKLAPVGGETRA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=159, Percent_Identity=30.8176100628931, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI154813199, Length=156, Percent_Identity=31.4102564102564, Blast_Score=71, Evalue=7e-13,
Organism=Escherichia coli, GI1787283, Length=166, Percent_Identity=28.9156626506024, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 21149; Mature: 21018

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLEKLAEYRCNGVVVEIARGDITEAECEAVVNPANSLMIMGGGVAGALRRAAGPEVEEE
CCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCHHHH
ARRKAPVPVGEAIHTGAGRLEPRIKYIIHAPTMERPAMRTTQGKVVKAVLAALREAEKLN
HHHCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
VGCLALPAMGAGVGGLTARESLEAIMEALDEFLGSGGKLPPRIILVAYSERDAKQFLDEI
CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHH
KRVKTRNCKLAPVGGETRA
HHHHHCCCEEEECCCCCCC
>Mature Secondary Structure 
PLEKLAEYRCNGVVVEIARGDITEAECEAVVNPANSLMIMGGGVAGALRRAAGPEVEEE
CHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCHHHH
ARRKAPVPVGEAIHTGAGRLEPRIKYIIHAPTMERPAMRTTQGKVVKAVLAALREAEKLN
HHHCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
VGCLALPAMGAGVGGLTARESLEAIMEALDEFLGSGGKLPPRIILVAYSERDAKQFLDEI
CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHH
KRVKTRNCKLAPVGGETRA
HHHHHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]