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The map label for this gene is 124027018

Identifier: 124027018

GI number: 124027018

Start: 105663

End: 107039

Strand: Reverse

Name: 124027018

Synonym: Hbut_0118

Alternate gene names: NA

Gene position: 107039-105663 (Counterclockwise)

Preceding gene: 124027019

Following gene: 124027017

Centisome position: 6.42

GC content: 51.56

Gene sequence:

>1377_bases
ATGAATTTGGGGCGTGGTGTCTACAGGCAGCGCACCTCGATGATTGCAGCTGGTGTACTCGTCATAGTCCTGGGTCTAGC
ACTGCTGGCAGCTTCCTCCATGGCGAGGCCAGCCGGCGACCTAGTGGTTGTAGCTGAGGTTTATGGCGTTATCGATAGCG
CTATGTGTAACTATGTGAATGACGCGATAACCTACGCTCACGAGTCTCACGCTAAGCTCCTCGTAATACTACTAAACACT
CCCGGTGGGAGCCTTGACGCAGCACTCTGCATTACTGAAGCTATATCAAAGTCTCCCGTACCTGTCGCAGGTTTTGTTGT
TGAGCGCTGGGCTGTTAGCGCGGGCACAATGATACTAATGTGTAGCCATTATGCAGCTATGCAGCCCGGAACAATTATAG
GTGCTGTCCAGCCCGTAGCATTAACCCCTACGGGTACCTACCAACCAATAAACGAGTCCAAGATGCTGAACCCAGTGTAC
AAGAAGATAGAGGCGTGTATGAGGCTATATAATCGTAATATAACGGTTGCGAAGCGCTTTGTCTATGAGAACCTCGTCTT
AACAGCTGAGGAAGCCGTAAAAATTCACGTAGTCGAAGCAGTAGCTGTAAACATTCACGATCTCCTAGCGAAGATTAATG
GGTCAAAGGTAAACATGGTTTCCGGGCAGACCGAGATAGTGCTCCATGACCCCGTAGTAGAGTACTACAGTATGCCGCTC
GGCCAACGGATACTCCACTACCTCTCAGACCCCCTCGTAAGCTCGATATTCTCCAGCATAGGCATACTCCTACTCATAGT
TGCACTAGCCTCTGGAACCCTCCAGTTAGCCGTGGTGGCGATAGCACTTCTACTCCTAAGCTTCATAGGGTTCGGCCTCG
CTGCTAGCCTTGCAGCAGCTGCACTCATACTCTTCGGTCTAATACTGATAGGTGTAGAACTCTTCGTCACCCCAGGCTTC
GGCATAATAGGCTTTACAGGTATAGCGCTGACATTGTTAGGTGTGTTGATAGGGTTCACGGGCAAGCCAACGTATATTGC
GGGGGAGAGCCTCAGGGTGGCGCAGCGCATACTAATAGCAGTGATAGTCCCCCTATCAGGGCTCATGGGTATAGTCGTCT
ATAAGGCTGCAAGGGCTTGGAGAAGGAAGCCCGTCTATATGCCACTACCCGTTGGCAAACAGGGTCGTGCAATAGATGAG
ATGCCGCCAGGCGGCACAGGCTTCGTCATGGTTGAGGGCGAGTACTGGCAAGCGCGGAACGTTGGTCGTCGAATTATACG
GAGGGATGAAAAGGTGAGGGTTGTAGGCAAGGATGGTGTAACCCTCCTAGTTGTACCCTACGAGGAGGGAGGGACTACTG
GAAAGGCTTCGACATGA

Upstream 100 bases:

>100_bases
ACTCATCTTCTTTGCCTTGCTTAAACGCCTACTAGAATAAGAGGGGTAAGTACTGTAGCACAGTAGGACAGACCCAGGAG
ACTATAGAGGGTATTGTGAC

Downstream 100 bases:

>100_bases
TAACATATCATAACATATCCACGACAAAACTAATATTTGGAACATTCTTAGACTGTGAACGCAGAGGAGTTGAGTCCGGT
TATATTCTCTCGGAAAGGAA

Product: membrane-bound serine protease (ClpP class)

Products: NA

Alternate protein names: Membrane-Bound Serine Protease; Nodulation Protein NfeD; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; Membrane Bound Peptidase; Serine Protease; NfeD Protein; NfeD Family Protein; NfeD-Like Family; Protease/Transporter; Membrane-Bound ClpP-Class Protease; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; S49 Family Serine Protease; Short-Chain Alcohol Dehydrogenase; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD Nodulation Like Protein Membrane Protein; Transmembrane Protein; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Nodulation Protein; Membrane-Bound Protease; NfeD Membrane-Bound Serine Protease; Nodulation Protein Nfed; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MNLGRGVYRQRTSMIAAGVLVIVLGLALLAASSMARPAGDLVVVAEVYGVIDSAMCNYVNDAITYAHESHAKLLVILLNT
PGGSLDAALCITEAISKSPVPVAGFVVERWAVSAGTMILMCSHYAAMQPGTIIGAVQPVALTPTGTYQPINESKMLNPVY
KKIEACMRLYNRNITVAKRFVYENLVLTAEEAVKIHVVEAVAVNIHDLLAKINGSKVNMVSGQTEIVLHDPVVEYYSMPL
GQRILHYLSDPLVSSIFSSIGILLLIVALASGTLQLAVVAIALLLLSFIGFGLAASLAAAALILFGLILIGVELFVTPGF
GIIGFTGIALTLLGVLIGFTGKPTYIAGESLRVAQRILIAVIVPLSGLMGIVVYKAARAWRRKPVYMPLPVGKQGRAIDE
MPPGGTGFVMVEGEYWQARNVGRRIIRRDEKVRVVGKDGVTLLVVPYEEGGTTGKAST

Sequences:

>Translated_458_residues
MNLGRGVYRQRTSMIAAGVLVIVLGLALLAASSMARPAGDLVVVAEVYGVIDSAMCNYVNDAITYAHESHAKLLVILLNT
PGGSLDAALCITEAISKSPVPVAGFVVERWAVSAGTMILMCSHYAAMQPGTIIGAVQPVALTPTGTYQPINESKMLNPVY
KKIEACMRLYNRNITVAKRFVYENLVLTAEEAVKIHVVEAVAVNIHDLLAKINGSKVNMVSGQTEIVLHDPVVEYYSMPL
GQRILHYLSDPLVSSIFSSIGILLLIVALASGTLQLAVVAIALLLLSFIGFGLAASLAAAALILFGLILIGVELFVTPGF
GIIGFTGIALTLLGVLIGFTGKPTYIAGESLRVAQRILIAVIVPLSGLMGIVVYKAARAWRRKPVYMPLPVGKQGRAIDE
MPPGGTGFVMVEGEYWQARNVGRRIIRRDEKVRVVGKDGVTLLVVPYEEGGTTGKAST
>Mature_458_residues
MNLGRGVYRQRTSMIAAGVLVIVLGLALLAASSMARPAGDLVVVAEVYGVIDSAMCNYVNDAITYAHESHAKLLVILLNT
PGGSLDAALCITEAISKSPVPVAGFVVERWAVSAGTMILMCSHYAAMQPGTIIGAVQPVALTPTGTYQPINESKMLNPVY
KKIEACMRLYNRNITVAKRFVYENLVLTAEEAVKIHVVEAVAVNIHDLLAKINGSKVNMVSGQTEIVLHDPVVEYYSMPL
GQRILHYLSDPLVSSIFSSIGILLLIVALASGTLQLAVVAIALLLLSFIGFGLAASLAAAALILFGLILIGVELFVTPGF
GIIGFTGIALTLLGVLIGFTGKPTYIAGESLRVAQRILIAVIVPLSGLMGIVVYKAARAWRRKPVYMPLPVGKQGRAIDE
MPPGGTGFVMVEGEYWQARNVGRRIIRRDEKVRVVGKDGVTLLVVPYEEGGTTGKAST

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48722; Mature: 48722

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLGRGVYRQRTSMIAAGVLVIVLGLALLAASSMARPAGDLVVVAEVYGVIDSAMCNYVN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH
DAITYAHESHAKLLVILLNTPGGSLDAALCITEAISKSPVPVAGFVVERWAVSAGTMILM
HHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEE
CSHYAAMQPGTIIGAVQPVALTPTGTYQPINESKMLNPVYKKIEACMRLYNRNITVAKRF
EHHHHHCCCCCEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VYENLVLTAEEAVKIHVVEAVAVNIHDLLAKINGSKVNMVSGQTEIVLHDPVVEYYSMPL
HHHHHHEEHHHHEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCHHHHHCCCH
GQRILHYLSDPLVSSIFSSIGILLLIVALASGTLQLAVVAIALLLLSFIGFGLAASLAAA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALILFGLILIGVELFVTPGFGIIGFTGIALTLLGVLIGFTGKPTYIAGESLRVAQRILIA
HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHH
VIVPLSGLMGIVVYKAARAWRRKPVYMPLPVGKQGRAIDEMPPGGTGFVMVEGEYWQARN
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
VGRRIIRRDEKVRVVGKDGVTLLVVPYEEGGTTGKAST
HHHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNLGRGVYRQRTSMIAAGVLVIVLGLALLAASSMARPAGDLVVVAEVYGVIDSAMCNYVN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH
DAITYAHESHAKLLVILLNTPGGSLDAALCITEAISKSPVPVAGFVVERWAVSAGTMILM
HHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEE
CSHYAAMQPGTIIGAVQPVALTPTGTYQPINESKMLNPVYKKIEACMRLYNRNITVAKRF
EHHHHHCCCCCEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VYENLVLTAEEAVKIHVVEAVAVNIHDLLAKINGSKVNMVSGQTEIVLHDPVVEYYSMPL
HHHHHHEEHHHHEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCHHHHHCCCH
GQRILHYLSDPLVSSIFSSIGILLLIVALASGTLQLAVVAIALLLLSFIGFGLAASLAAA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALILFGLILIGVELFVTPGFGIIGFTGIALTLLGVLIGFTGKPTYIAGESLRVAQRILIA
HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHH
VIVPLSGLMGIVVYKAARAWRRKPVYMPLPVGKQGRAIDEMPPGGTGFVMVEGEYWQARN
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
VGRRIIRRDEKVRVVGKDGVTLLVVPYEEGGTTGKAST
HHHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA