Click here to switch to the map view.

The map label for this gene is yfjD [C]

Identifier: 123966855

GI number: 123966855

Start: 1417410

End: 1418387

Strand: Direct

Name: yfjD [C]

Synonym: P9515_16221

Alternate gene names: 123966855

Gene position: 1417410-1418387 (Clockwise)

Preceding gene: 123966851

Following gene: 123966856

Centisome position: 83.17

GC content: 31.39

Gene sequence:

>978_bases
ATGGAACCAAGTGTTTACATTCTAATTTTACTAATAATAATAATATTAGTAGGTTCCGCATGTTGTTCAGGAGTAGAAGC
AGCTTTTTTAGCTGTCAACTCCATAAGGATTTTAGAATTAGCATCAAAACAAAAACCTAAAAGTTCTGCTAATCAACTTC
TTAAACTTAGAAAACATCTTGGAAGAACTTTAACTGTAATTACCATAACTAATAATGGTTTTAATATAATAGGTAGTCTC
CTTTTAGGTGTTTATGGAGCCTTAATAATTAAAAGTAGTTTTGGTTTAACATTATTTTCGATCGCTTTTTATGTATTAGT
AGTATTACTTGGCGAAGTACTTCCTAAAGCAATAGGTACAAGATTTTCATTGCAAATAGCTATATTATCTGTTCCAATTT
TGAGAATGTTAAATAGTTTAATGAGGCCTTTCTTAATATTAATAGAGCATTTATTTCCTGTGATCACTGCAGAGAACGAA
ATATCAACGGATGAAGAAGAAATTAGGCAAATGGCAAAAATTGGTTCACAGAAGGGGTTCATAGAGGCTGATGAAGCCGC
AATGATACTTAAAGTTTTTCAATTAAATGATTTGAAAGCTAAAGATTTAATGATCCCAAGAGTATCTGCACCTAGTCTTG
ATGGTTCCTCAAATCTTGATGAAATTTCAAAACTAATAATTTCAAATAATTCTCCATGGTGGATTGTCTTGGGTGATAAA
GTTGATAAAATACAAGGAATAGCCAAACGTGAAAACTTACTAACTAGTCTTATCAAAGGAGAAAATAAAAAATTACTATC
AGATTTATGTGATCCTGTGGACTACATACCAGAAATGATAAAAGTAGACAAGTTATTAACAAAATTTGACAAGGATAACA
AAGGAGTGAAAGTAGTAGTAGATGAGTTTGGAGGATTCGTGGGAATAATTGGATCAGAAGCTGTATTATCTGTATTGGCA
GGATGGTGGCAAGAATAA

Upstream 100 bases:

>100_bases
AAAAATTTTTGTATTAGTTTTAAACATAAATTGTCAATTGGCGGGTTTTGTAAAAAAGTGGAAGAATGAATTAAAAGATA
TTTAAAACTAATCAATTTAA

Downstream 100 bases:

>100_bases
ATATGAAACAAATCAATATTGATAAAATTTATTTACTTTTAAAAAAATGGTGGGAGAGTATCGACCTTAGCAACTATGAA
AAAAGTAATTTAAATAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MEPSVYILILLIIIILVGSACCSGVEAAFLAVNSIRILELASKQKPKSSANQLLKLRKHLGRTLTVITITNNGFNIIGSL
LLGVYGALIIKSSFGLTLFSIAFYVLVVLLGEVLPKAIGTRFSLQIAILSVPILRMLNSLMRPFLILIEHLFPVITAENE
ISTDEEEIRQMAKIGSQKGFIEADEAAMILKVFQLNDLKAKDLMIPRVSAPSLDGSSNLDEISKLIISNNSPWWIVLGDK
VDKIQGIAKRENLLTSLIKGENKKLLSDLCDPVDYIPEMIKVDKLLTKFDKDNKGVKVVVDEFGGFVGIIGSEAVLSVLA
GWWQE

Sequences:

>Translated_325_residues
MEPSVYILILLIIIILVGSACCSGVEAAFLAVNSIRILELASKQKPKSSANQLLKLRKHLGRTLTVITITNNGFNIIGSL
LLGVYGALIIKSSFGLTLFSIAFYVLVVLLGEVLPKAIGTRFSLQIAILSVPILRMLNSLMRPFLILIEHLFPVITAENE
ISTDEEEIRQMAKIGSQKGFIEADEAAMILKVFQLNDLKAKDLMIPRVSAPSLDGSSNLDEISKLIISNNSPWWIVLGDK
VDKIQGIAKRENLLTSLIKGENKKLLSDLCDPVDYIPEMIKVDKLLTKFDKDNKGVKVVVDEFGGFVGIIGSEAVLSVLA
GWWQE
>Mature_325_residues
MEPSVYILILLIIIILVGSACCSGVEAAFLAVNSIRILELASKQKPKSSANQLLKLRKHLGRTLTVITITNNGFNIIGSL
LLGVYGALIIKSSFGLTLFSIAFYVLVVLLGEVLPKAIGTRFSLQIAILSVPILRMLNSLMRPFLILIEHLFPVITAENE
ISTDEEEIRQMAKIGSQKGFIEADEAAMILKVFQLNDLKAKDLMIPRVSAPSLDGSSNLDEISKLIISNNSPWWIVLGDK
VDKIQGIAKRENLLTSLIKGENKKLLSDLCDPVDYIPEMIKVDKLLTKFDKDNKGVKVVVDEFGGFVGIIGSEAVLSVLA
GWWQE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=320, Percent_Identity=26.25, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI145693175, Length=312, Percent_Identity=25, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786879, Length=156, Percent_Identity=26.2820512820513, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 35674; Mature: 35674

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSVYILILLIIIILVGSACCSGVEAAFLAVNSIRILELASKQKPKSSANQLLKLRKHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
GRTLTVITITNNGFNIIGSLLLGVYGALIIKSSFGLTLFSIAFYVLVVLLGEVLPKAIGT
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
RFSLQIAILSVPILRMLNSLMRPFLILIEHLFPVITAENEISTDEEEIRQMAKIGSQKGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
IEADEAAMILKVFQLNDLKAKDLMIPRVSAPSLDGSSNLDEISKLIISNNSPWWIVLGDK
CCCCHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC
VDKIQGIAKRENLLTSLIKGENKKLLSDLCDPVDYIPEMIKVDKLLTKFDKDNKGVKVVV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
DEFGGFVGIIGSEAVLSVLAGWWQE
HHHCCEEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEPSVYILILLIIIILVGSACCSGVEAAFLAVNSIRILELASKQKPKSSANQLLKLRKHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
GRTLTVITITNNGFNIIGSLLLGVYGALIIKSSFGLTLFSIAFYVLVVLLGEVLPKAIGT
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
RFSLQIAILSVPILRMLNSLMRPFLILIEHLFPVITAENEISTDEEEIRQMAKIGSQKGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
IEADEAAMILKVFQLNDLKAKDLMIPRVSAPSLDGSSNLDEISKLIISNNSPWWIVLGDK
CCCCHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC
VDKIQGIAKRENLLTSLIKGENKKLLSDLCDPVDYIPEMIKVDKLLTKFDKDNKGVKVVV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
DEFGGFVGIIGSEAVLSVLAGWWQE
HHHCCEEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]