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The map label for this gene is rnpA

Identifier: 123966589

GI number: 123966589

Start: 1188674

End: 1189063

Strand: Direct

Name: rnpA

Synonym: P9515_13561

Alternate gene names: 123966589

Gene position: 1188674-1189063 (Clockwise)

Preceding gene: 123966588

Following gene: 123966590

Centisome position: 69.75

GC content: 27.95

Gene sequence:

>390_bases
ATGGCCTTGCCCAAAGCTATGCGTTTAAAAGGTCATAGGACTTTTGATTACATTCATAAAAACTCTGAAAAATATTACGG
TAAATTAATGACTTTTAAAATAGCGAGGTCAAATCCAAAAATTCTTATTTCTCATAAAAATTTTAATAGTTTAAATAATT
TTAAAATTGCAATCGCTATAAGTAAGAAAGTTTCAAAAAAAGCAGTTGTAAGAAACAAAATCAGGAGACTATTGCAGGAT
TACTTTTTAAAAAACTTTAGAAAAGATAAGAACCACAAACCTTATTGGTTACTTGTTAACCTTAAGTCAAGTGACTCTTG
CAACTATGAATCCAAACTACTGCAAGAATTTCAACACCTAATTTTTAAGTCAGGTCTTTTAAATGATTAA

Upstream 100 bases:

>100_bases
GCTTTAGAGTAAGAATGCGTTCTCACACTGGAAGAAGAGTTATTAAGAGCAGAAGAAAAAGAGGGAGAGATAGAATAGCC
GTTTAATAAAAATAACCATA

Downstream 100 bases:

>100_bases
CATAAATGAAGAATCCTTTTATGAAGGTGGTCCCGCCAAAAGTGATTTAATAATAAATCTATTTGCTGGTTTAACCCTTC
TTGGCCTTCCTTTTACTTTT

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MALPKAMRLKGHRTFDYIHKNSEKYYGKLMTFKIARSNPKILISHKNFNSLNNFKIAIAISKKVSKKAVVRNKIRRLLQD
YFLKNFRKDKNHKPYWLLVNLKSSDSCNYESKLLQEFQHLIFKSGLLND

Sequences:

>Translated_129_residues
MALPKAMRLKGHRTFDYIHKNSEKYYGKLMTFKIARSNPKILISHKNFNSLNNFKIAIAISKKVSKKAVVRNKIRRLLQD
YFLKNFRKDKNHKPYWLLVNLKSSDSCNYESKLLQEFQHLIFKSGLLND
>Mature_128_residues
ALPKAMRLKGHRTFDYIHKNSEKYYGKLMTFKIARSNPKILISHKNFNSLNNFKIAIAISKKVSKKAVVRNKIRRLLQDY
FLKNFRKDKNHKPYWLLVNLKSSDSCNYESKLLQEFQHLIFKSGLLND

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_PROM5 (A2BXQ2)

Other databases:

- EMBL:   CP000552
- RefSeq:   YP_001011670.1
- ProteinModelPortal:   A2BXQ2
- STRING:   A2BXQ2
- GeneID:   4718791
- GenomeReviews:   CP000552_GR
- KEGG:   pmc:P9515_13561
- HOGENOM:   HBG728160
- OMA:   MRLKGHR
- ProtClustDB:   CLSK919642
- BioCyc:   PMAR167542:P9515ORF_1417-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 15319; Mature: 15188

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPKAMRLKGHRTFDYIHKNSEKYYGKLMTFKIARSNPKILISHKNFNSLNNFKIAIAI
CCCCCCHHHCCCCHHHHHHCCCHHHHCEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEE
SKKVSKKAVVRNKIRRLLQDYFLKNFRKDKNHKPYWLLVNLKSSDSCNYESKLLQEFQHL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
IFKSGLLND
HHHCCCCCC
>Mature Secondary Structure 
ALPKAMRLKGHRTFDYIHKNSEKYYGKLMTFKIARSNPKILISHKNFNSLNNFKIAIAI
CCCCCHHHCCCCHHHHHHCCCHHHHCEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEE
SKKVSKKAVVRNKIRRLLQDYFLKNFRKDKNHKPYWLLVNLKSSDSCNYESKLLQEFQHL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
IFKSGLLND
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA