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The map label for this gene is pcbC [H]

Identifier: 123966575

GI number: 123966575

Start: 1178201

End: 1179259

Strand: Reverse

Name: pcbC [H]

Synonym: P9515_13421

Alternate gene names: 123966575

Gene position: 1179259-1178201 (Counterclockwise)

Preceding gene: 123966576

Following gene: 123966574

Centisome position: 69.2

GC content: 37.02

Gene sequence:

>1059_bases
GTGTTACAAAACTACGGAAAATCTGATGTTACCTATGACTGGTACGCAGGAAATTCTGGTGTTGTTGGCCGTTCAGGTAA
ATTCATAGCTGCTCATGCTGCTCATGCAGGACTAATGATGTTCTGGGCAGGGGCTTTTGGATTATTTGAATTAGCTCGTT
ATGACGCCAGCATTCCTATGGGTGCTCAAAAAGCAATTGTATTACCACATCTAGCGGGTATTGGGATTGGAGGAATTGAA
AATGGAGTTATTACAGAACCATACGGTATTGTTGTAATTTGCACATTGCATCTAATCTTCTCAGCAGTATTAGGTGCTGG
TGGATTACTTCATTCCAATAAATTTGCAGGTGATCTTGGTGATTATCCAGAGAATAGTAAGCCTCAAAAATTTGACTTTG
AGTGGGATGATCCTGATAAGTTGACTTTCATACTTGGTCATCATCTTATTTTCTTGGGCCTTGGAGCAATAATGTTTGTT
GAATGGGCTCGTATTCATGGTATTTACGATCCTGCTATTGGTTCAACACGACAAGTTGTCTACAATTTAGATATCGCTGC
TATTTGGAATCATCAGTTTGATTTCCTTAAAATTGATAGTCTAGAAGATATTATGGGTGGTCATGCTTTCTTAGCATTCC
TAGAAATTATTGGAGGAGTTTTCCATATTTGTACAAAACAATTTGGAGAATATACAGAATTCAAGGGTAAAGGATTATTA
GGTGCTGAGGCTATTCTTTCTTACTCAGTAGTTGGAGTTTCTTATATGGCATTTGTAGCAGCTTTCTGGTGTGCTTCAAA
CACTACTATTTATCCAGTAGATCTTTATGGGGAACCTTTAAAGCTTTCATTTGAATTTGCTCCTTATTTTACTGACACTG
TTGATTTAGGATCCGGAGCATATAGTTCAAGAGCATGGCTTGCCAATACTCACTTCTATTTAGGATTCTTTTTCTTACAA
GGACATTTATGGCATGCTTTAAGAGCTATGGGATTTGATTTCAAGAAAATTGGTCAAGCGTTTGACAATATGGAAAATAC
AAAAATTACACAAAATTAG

Upstream 100 bases:

>100_bases
CGAAGCATGTTTTTTTTACATAAATAATTAAGACCTGTAAAGATCTTGTAAAAAATAGCCGAATTGGCAATAAGCTCAAT
TTGCTGTTTATTTAAATCAA

Downstream 100 bases:

>100_bases
TTTTATTAACTAAATTAATTCCCCTCTATTTTTAATAGAGGGTTTTTTTTTGTAATATCATAATTAAACTTGCTTTTTTT
TTATAATGTCGGAATTAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MLQNYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKAIVLPHLAGIGIGGIE
NGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLGDYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFV
EWARIHGIYDPAIGSTRQVVYNLDIAAIWNHQFDFLKIDSLEDIMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLSFEFAPYFTDTVDLGSGAYSSRAWLANTHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNMENTKITQN

Sequences:

>Translated_352_residues
MLQNYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKAIVLPHLAGIGIGGIE
NGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLGDYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFV
EWARIHGIYDPAIGSTRQVVYNLDIAAIWNHQFDFLKIDSLEDIMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLSFEFAPYFTDTVDLGSGAYSSRAWLANTHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNMENTKITQN
>Mature_352_residues
MLQNYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPMGAQKAIVLPHLAGIGIGGIE
NGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLGDYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFV
EWARIHGIYDPAIGSTRQVVYNLDIAAIWNHQFDFLKIDSLEDIMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLSFEFAPYFTDTVDLGSGAYSSRAWLANTHFYLGFFFLQ
GHLWHALRAMGFDFKKIGQAFDNMENTKITQN

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38773; Mature: 38773

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQNYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPM
CCCCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GAQKAIVLPHLAGIGIGGIENGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLG
CCCCEEEEHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
DYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFVEWARIHGIYDPAIGSTRQVV
CCCCCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
YNLDIAAIWNHQFDFLKIDSLEDIMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
EEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLSFEFAPYFTDTVDLGSGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCC
YSSRAWLANTHFYLGFFFLQGHLWHALRAMGFDFKKIGQAFDNMENTKITQN
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure
MLQNYGKSDVTYDWYAGNSGVVGRSGKFIAAHAAHAGLMMFWAGAFGLFELARYDASIPM
CCCCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GAQKAIVLPHLAGIGIGGIENGVITEPYGIVVICTLHLIFSAVLGAGGLLHSNKFAGDLG
CCCCEEEEHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
DYPENSKPQKFDFEWDDPDKLTFILGHHLIFLGLGAIMFVEWARIHGIYDPAIGSTRQVV
CCCCCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
YNLDIAAIWNHQFDFLKIDSLEDIMGGHAFLAFLEIIGGVFHICTKQFGEYTEFKGKGLL
EEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
GAEAILSYSVVGVSYMAFVAAFWCASNTTIYPVDLYGEPLKLSFEFAPYFTDTVDLGSGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCC
YSSRAWLANTHFYLGFFFLQGHLWHALRAMGFDFKKIGQAFDNMENTKITQN
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10725393; 12917486; 11575723 [H]