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The map label for this gene is pbsY

Identifier: 123966441

GI number: 123966441

Start: 1066058

End: 1066177

Strand: Reverse

Name: pbsY

Synonym: P9515_12081

Alternate gene names: 123966441

Gene position: 1066177-1066058 (Counterclockwise)

Preceding gene: 123966444

Following gene: 123966440

Centisome position: 62.56

GC content: 33.33

Gene sequence:

>120_bases
ATGTTAAGAACTCTTGTCGTATTTGCTCCCATTATTGCTGCTCTTGCGTGGGTTATTTTTAATATACAAAAACCCGCAAG
AGAACAATTTAATCGAGATTTTTTGGGAAAAAAGGATTAA

Upstream 100 bases:

>100_bases
GAAATATATTTTTTTAATTAAAAACATCAAAACTTTAAATTTCTCTCTTTATTTAAGTTTGAAAGGTAGGATAAAAAGAA
TAAATAACTAAAATTTTAAA

Downstream 100 bases:

>100_bases
ATTTAATTGTTAAATAAAGAAGTTATCGTAATAGGAGCTGGTCTTGCTGGTTGTGAAGCCGCTTGGCAAATAGCTAATTC
TGGAGTAGAAGTGAAACTTG

Product: photosystem II protein Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 39; Mature: 39

Protein sequence:

>39_residues
MLRTLVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKKD

Sequences:

>Translated_39_residues
MLRTLVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKKD
>Mature_39_residues
MLRTLVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKKD

Specific function: Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBY_PROM5 (A2BXA4)

Other databases:

- EMBL:   CP000552
- RefSeq:   YP_001011522.1
- STRING:   A2BXA4
- GeneID:   4718971
- GenomeReviews:   CP000552_GR
- KEGG:   pmc:P9515_12081
- HOGENOM:   HBG636445
- ProtClustDB:   PRK13240
- BioCyc:   PMAR167542:P9515ORF_1262-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_00717
- InterPro:   IPR009388

Pfam domain/function: PF06298 PsbY

EC number: NA

Molecular weight: Translated: 4531; Mature: 4531

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x19c99254)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTLVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKKD
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCH
>Mature Secondary Structure
MLRTLVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKKD
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA