| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is pheT [H]
Identifier: 123966185
GI number: 123966185
Start: 842766
End: 845228
Strand: Direct
Name: pheT [H]
Synonym: P9515_09521
Alternate gene names: 123966185
Gene position: 842766-845228 (Clockwise)
Preceding gene: 123966179
Following gene: 123966186
Centisome position: 49.45
GC content: 29.15
Gene sequence:
>2463_bases ATGAAGGTTTCTCAAAATTGGTTAAAATCCCTTGTAGATATAAATACTTCACCTGAAGATTTATCTGAAAAATTATCAAT CGGCGGATTTGAAGTTGAGTCTCTTATTAATTGCTCAGAAAATGTTAAAGGAGTTGTCTTAGGAAAAGTTATATCAGTAG TTAAACATGATAATTCTGATAAATTATCTATCTGTAATGTTGATATTGGAAGCTCGAATTCTCTACAAATAGTATGTGGA GCAAAAAATGTAAAAGCAAATATATATGTCTATGTTGCTACTGTTGGAGTCCATTTAAACGCAATCAATTTAACTATCAA AAAGAGTGAAATAAGAGGAACTTTGAGCGAAGGAATGATATGTTCATTAGAGGAGTTGGGAATTGAAGATAATAGTGAAG GTATTGCTATTATTGAGGAGGAAAAGGCTTCAAAGCATATATTAGGTACCCCTGCTGCCCTTTTACTTGATTTGAACGAT TACGTATACGATCTAGCTATAACTGCTAATAGACCTGATGGAATGTCTGTTGTTGGAATTGCTAGAGAAATATCCGCTCT TCTGGAAACAAATTTAAATCTTCCAAAAATAAAAAATGTATACGAAATTAATGTTCATAAGGATTTTGATCTGTGCACTG AGGCTATTACAAAAAAATGTCTTTATTCAATTAGTAAAATTGTATCTGTGAGTGGTAAGAAAATTACTCCTCAATGGATT AAAGATCGTTTAGATAAATCTGGGATTAATTCGATTAATCTTTTGGTGGATATAACTAACTTCATACTTTTAGAGCAAGG TCAACCATTACATGCATTCGATTTCGATAAATTAACAAATTTAGTTGGTAGAGAGGTTTTACCTGAAGATTTTTCTGTTA GAAAAGCAAAGGAAAACGAAAGTTTATTGTGTTTAAATGGTGAGATTTATAAATTAAATGAAAACATAACAATTATTGCT TGTGATGATAAGCCAGTTGCCATAGCGGGTGTGATTGGTGGTTTGCAAACAGCTGTGGATAAAGAAACATCTTCAATTTA TCTTGAAGGTGCTGTTTTTAATCCCGTTACAATAAGAAAATCAGTAAAAGAAATTGGAGTTAGAACAGAATCTAGTAGTA GATATGAAAAAGGAATCTCTTTTAAAAATACATTAAATTCTGTAAGCCGCGCTATCAATATAATAGAGGAGTACTTTAAT ATTACGAAACCTGTAATTCATACTTCAATAGATTTACCGAATACCGAAATATTAATACCACTAAGGAGAAATAGAATTCA CAAACTACTTGGTCCTTTGGCAATTAGAAATAACGATTATGAGATGAATGGTCAAATACAAAAGAGAAATTTATCAGATA AAGAAATAACAGATAAATTAAAGCTAATTGGTTGTAAATTAAATAATAAAGAATATGGATGGGATGTTGAAGTTATTCCC AACAGGTCGCAAGACTTAGTAAGAGAAATAGATTTGATAGAGGAAATTGCACGGTTAATAGGTTATGACATGTTTGATTT TAATTTGCCAAATCCTATAAAACCAGGAAAACTTTCTTCTTCTCAAATAGCACTAAGGAAGTTAAAAACTGGATTTATAG ATAATGGCTTTAACGAAGTGTTGTCTTATTCTCTTGTTCCAGAGACTAATAATGATTTAATAAAAATTTCAAATCCATTA TTAACTGAAACAAGTTGCTTAAGAGATAATATCTGGCAAGAACACATTAAAATTTGTAATCAAAATATAAATTCAGGATA TGATTATTGTTGGATATTTGAAGTTGGAAATATATTTCATAAAAAACCTGACATATCACAAGAAGAAATCTTAAATGGAG CAATTTATGGAAATAACAAATTCGATAAATGGTACAGATCAAGTAAAGATGAAAATTTGAACTACTACGAAGCAAGAGGA AAGTTAAAGGAAGCATTAACGCTTTTAAATATATCAATTGAAGATAAGCCAACTGATTCAATAGATTTTCTTCATCCAGG TAGGACTGCCAAGTTATTTACTGAAGGTAAAGAAGTTGGTTATTTTGGAGAAATTCATCCAAAATTAGTCTCGAATAAAA AGGCATTAAAAAAAATGTACCTCTTTAGTTTGAAAATACCCAATATTTTAAATGCATGTACTAGAAAAAATAAATGGATA CCAGTTTATAAACAATTTCCTACAGTTCCAAAAATGGAACGAGATATTAATTTTATATTCAATAAAAAATACTTAGTAAA TGAGATAGTCTCACAAATAAAGAAATCTGGCAAAAAATTATTAGAAGAAGTTAATTTAATTGATGTTTATGACGATAATA GTTTTGGTAATGATTTCATAAGCTATACATTTAGATTGTCATATAGAGATTCTGAAAAAACATTATTAGATTCTGATATC GTTGATCTACATGAAAACATAGTTGAAATTATTGAAAAAAAATTCTCCACAAAATTAAGATAG
Upstream 100 bases:
>100_bases TTGATTAATACGCTGATGTATAATTTTCTATTGTACAACTTCAAGAAACTATTTTGCATATATTCACTTTTCTTTTAGTA TCATTAGACAAAAATAATAA
Downstream 100 bases:
>100_bases CAGCATTATCGTAAGTCTTATAATAGACTAATAATAGGTCTAATATTAATTCTTATATGAGATAGTTAATATTCATATAA AAACAACTAATCTTATATAA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 820; Mature: 820
Protein sequence:
>820_residues MKVSQNWLKSLVDINTSPEDLSEKLSIGGFEVESLINCSENVKGVVLGKVISVVKHDNSDKLSICNVDIGSSNSLQIVCG AKNVKANIYVYVATVGVHLNAINLTIKKSEIRGTLSEGMICSLEELGIEDNSEGIAIIEEEKASKHILGTPAALLLDLND YVYDLAITANRPDGMSVVGIAREISALLETNLNLPKIKNVYEINVHKDFDLCTEAITKKCLYSISKIVSVSGKKITPQWI KDRLDKSGINSINLLVDITNFILLEQGQPLHAFDFDKLTNLVGREVLPEDFSVRKAKENESLLCLNGEIYKLNENITIIA CDDKPVAIAGVIGGLQTAVDKETSSIYLEGAVFNPVTIRKSVKEIGVRTESSSRYEKGISFKNTLNSVSRAINIIEEYFN ITKPVIHTSIDLPNTEILIPLRRNRIHKLLGPLAIRNNDYEMNGQIQKRNLSDKEITDKLKLIGCKLNNKEYGWDVEVIP NRSQDLVREIDLIEEIARLIGYDMFDFNLPNPIKPGKLSSSQIALRKLKTGFIDNGFNEVLSYSLVPETNNDLIKISNPL LTETSCLRDNIWQEHIKICNQNINSGYDYCWIFEVGNIFHKKPDISQEEILNGAIYGNNKFDKWYRSSKDENLNYYEARG KLKEALTLLNISIEDKPTDSIDFLHPGRTAKLFTEGKEVGYFGEIHPKLVSNKKALKKMYLFSLKIPNILNACTRKNKWI PVYKQFPTVPKMERDINFIFNKKYLVNEIVSQIKKSGKKLLEEVNLIDVYDDNSFGNDFISYTFRLSYRDSEKTLLDSDI VDLHENIVEIIEKKFSTKLR
Sequences:
>Translated_820_residues MKVSQNWLKSLVDINTSPEDLSEKLSIGGFEVESLINCSENVKGVVLGKVISVVKHDNSDKLSICNVDIGSSNSLQIVCG AKNVKANIYVYVATVGVHLNAINLTIKKSEIRGTLSEGMICSLEELGIEDNSEGIAIIEEEKASKHILGTPAALLLDLND YVYDLAITANRPDGMSVVGIAREISALLETNLNLPKIKNVYEINVHKDFDLCTEAITKKCLYSISKIVSVSGKKITPQWI KDRLDKSGINSINLLVDITNFILLEQGQPLHAFDFDKLTNLVGREVLPEDFSVRKAKENESLLCLNGEIYKLNENITIIA CDDKPVAIAGVIGGLQTAVDKETSSIYLEGAVFNPVTIRKSVKEIGVRTESSSRYEKGISFKNTLNSVSRAINIIEEYFN ITKPVIHTSIDLPNTEILIPLRRNRIHKLLGPLAIRNNDYEMNGQIQKRNLSDKEITDKLKLIGCKLNNKEYGWDVEVIP NRSQDLVREIDLIEEIARLIGYDMFDFNLPNPIKPGKLSSSQIALRKLKTGFIDNGFNEVLSYSLVPETNNDLIKISNPL LTETSCLRDNIWQEHIKICNQNINSGYDYCWIFEVGNIFHKKPDISQEEILNGAIYGNNKFDKWYRSSKDENLNYYEARG KLKEALTLLNISIEDKPTDSIDFLHPGRTAKLFTEGKEVGYFGEIHPKLVSNKKALKKMYLFSLKIPNILNACTRKNKWI PVYKQFPTVPKMERDINFIFNKKYLVNEIVSQIKKSGKKLLEEVNLIDVYDDNSFGNDFISYTFRLSYRDSEKTLLDSDI VDLHENIVEIIEKKFSTKLR >Mature_820_residues MKVSQNWLKSLVDINTSPEDLSEKLSIGGFEVESLINCSENVKGVVLGKVISVVKHDNSDKLSICNVDIGSSNSLQIVCG AKNVKANIYVYVATVGVHLNAINLTIKKSEIRGTLSEGMICSLEELGIEDNSEGIAIIEEEKASKHILGTPAALLLDLND YVYDLAITANRPDGMSVVGIAREISALLETNLNLPKIKNVYEINVHKDFDLCTEAITKKCLYSISKIVSVSGKKITPQWI KDRLDKSGINSINLLVDITNFILLEQGQPLHAFDFDKLTNLVGREVLPEDFSVRKAKENESLLCLNGEIYKLNENITIIA CDDKPVAIAGVIGGLQTAVDKETSSIYLEGAVFNPVTIRKSVKEIGVRTESSSRYEKGISFKNTLNSVSRAINIIEEYFN ITKPVIHTSIDLPNTEILIPLRRNRIHKLLGPLAIRNNDYEMNGQIQKRNLSDKEITDKLKLIGCKLNNKEYGWDVEVIP NRSQDLVREIDLIEEIARLIGYDMFDFNLPNPIKPGKLSSSQIALRKLKTGFIDNGFNEVLSYSLVPETNNDLIKISNPL LTETSCLRDNIWQEHIKICNQNINSGYDYCWIFEVGNIFHKKPDISQEEILNGAIYGNNKFDKWYRSSKDENLNYYEARG KLKEALTLLNISIEDKPTDSIDFLHPGRTAKLFTEGKEVGYFGEIHPKLVSNKKALKKMYLFSLKIPNILNACTRKNKWI PVYKQFPTVPKMERDINFIFNKKYLVNEIVSQIKKSGKKLLEEVNLIDVYDDNSFGNDFISYTFRLSYRDSEKTLLDSDI VDLHENIVEIIEKKFSTKLR
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=850, Percent_Identity=29.5294117647059, Blast_Score=360, Evalue=1e-100,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 92650; Mature: 92650
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVSQNWLKSLVDINTSPEDLSEKLSIGGFEVESLINCSENVKGVVLGKVISVVKHDNSD CCCCHHHHHHHHCCCCCHHHHHHHHCCCCEEHHHHHCCCCCCCEEHHHHHHHHHHCCCCC KLSICNVDIGSSNSLQIVCGAKNVKANIYVYVATVGVHLNAINLTIKKSEIRGTLSEGMI CEEEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEEEHHHHCCHHHCCCE CSLEELGIEDNSEGIAIIEEEKASKHILGTPAALLLDLNDYVYDLAITANRPDGMSVVGI EEHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEHHH AREISALLETNLNLPKIKNVYEINVHKDFDLCTEAITKKCLYSISKIVSVSGKKITPQWI HHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH KDRLDKSGINSINLLVDITNFILLEQGQPLHAFDFDKLTNLVGREVLPEDFSVRKAKENE HHHHHHCCCCCEEEEEEEEHEEEECCCCCCCEECHHHHHHHHHHHCCCCCCCHHCCCCCC SLLCLNGEIYKLNENITIIACDDKPVAIAGVIGGLQTAVDKETSSIYLEGAVFNPVTIRK CEEEECCEEEEECCCEEEEEECCCCEEEEHHHHHHHHHHCCCCCEEEEECEEECCHHHHH SVKEIGVRTESSSRYEKGISFKNTLNSVSRAINIIEEYFNITKPVIHTSIDLPNTEILIP HHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCEEEEE LRRNRIHKLLGPLAIRNNDYEMNGQIQKRNLSDKEITDKLKLIGCKLNNKEYGWDVEVIP CHHHHHHHHHCCCEECCCCEEECCEEEECCCCHHHHHHHEEEEEEEECCCCCCEEEEECC NRSQDLVREIDLIEEIARLIGYDMFDFNLPNPIKPGKLSSSQIALRKLKTGFIDNGFNEV CCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH LSYSLVPETNNDLIKISNPLLTETSCLRDNIWQEHIKICNQNINSGYDYCWIFEVGNIFH HEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHC KKPDISQEEILNGAIYGNNKFDKWYRSSKDENLNYYEARGKLKEALTLLNISIEDKPTDS CCCCCCHHHHHCCEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCC IDFLHPGRTAKLFTEGKEVGYFGEIHPKLVSNKKALKKMYLFSLKIPNILNACTRKNKWI CCCCCCCCCEEEEECCCCCCEECCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCCCE PVYKQFPTVPKMERDINFIFNKKYLVNEIVSQIKKSGKKLLEEVNLIDVYDDNSFGNDFI EHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEE SYTFRLSYRDSEKTLLDSDIVDLHENIVEIIEKKFSTKLR EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKVSQNWLKSLVDINTSPEDLSEKLSIGGFEVESLINCSENVKGVVLGKVISVVKHDNSD CCCCHHHHHHHHCCCCCHHHHHHHHCCCCEEHHHHHCCCCCCCEEHHHHHHHHHHCCCCC KLSICNVDIGSSNSLQIVCGAKNVKANIYVYVATVGVHLNAINLTIKKSEIRGTLSEGMI CEEEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEEEHHHHCCHHHCCCE CSLEELGIEDNSEGIAIIEEEKASKHILGTPAALLLDLNDYVYDLAITANRPDGMSVVGI EEHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEHHH AREISALLETNLNLPKIKNVYEINVHKDFDLCTEAITKKCLYSISKIVSVSGKKITPQWI HHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH KDRLDKSGINSINLLVDITNFILLEQGQPLHAFDFDKLTNLVGREVLPEDFSVRKAKENE HHHHHHCCCCCEEEEEEEEHEEEECCCCCCCEECHHHHHHHHHHHCCCCCCCHHCCCCCC SLLCLNGEIYKLNENITIIACDDKPVAIAGVIGGLQTAVDKETSSIYLEGAVFNPVTIRK CEEEECCEEEEECCCEEEEEECCCCEEEEHHHHHHHHHHCCCCCEEEEECEEECCHHHHH SVKEIGVRTESSSRYEKGISFKNTLNSVSRAINIIEEYFNITKPVIHTSIDLPNTEILIP HHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCEEEEE LRRNRIHKLLGPLAIRNNDYEMNGQIQKRNLSDKEITDKLKLIGCKLNNKEYGWDVEVIP CHHHHHHHHHCCCEECCCCEEECCEEEECCCCHHHHHHHEEEEEEEECCCCCCEEEEECC NRSQDLVREIDLIEEIARLIGYDMFDFNLPNPIKPGKLSSSQIALRKLKTGFIDNGFNEV CCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH LSYSLVPETNNDLIKISNPLLTETSCLRDNIWQEHIKICNQNINSGYDYCWIFEVGNIFH HEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHC KKPDISQEEILNGAIYGNNKFDKWYRSSKDENLNYYEARGKLKEALTLLNISIEDKPTDS CCCCCCHHHHHCCEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCC IDFLHPGRTAKLFTEGKEVGYFGEIHPKLVSNKKALKKMYLFSLKIPNILNACTRKNKWI CCCCCCCCCEEEEECCCCCCEECCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCCCE PVYKQFPTVPKMERDINFIFNKKYLVNEIVSQIKKSGKKLLEEVNLIDVYDDNSFGNDFI EHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEE SYTFRLSYRDSEKTLLDSDIVDLHENIVEIIEKKFSTKLR EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12917642 [H]