Click here to switch to the map view.

The map label for this gene is rfbH [H]

Identifier: 123965994

GI number: 123965994

Start: 689512

End: 690729

Strand: Direct

Name: rfbH [H]

Synonym: P9515_07591

Alternate gene names: 123965994

Gene position: 689512-690729 (Clockwise)

Preceding gene: 123965991

Following gene: 123965995

Centisome position: 40.46

GC content: 30.79

Gene sequence:

>1218_bases
ATGGAAGTGGAAAAAATATCATATGCAAAAACTGTTTATGGTAAAGAAGAAATTAATGCTGTTATAAAATGCCTTAATGA
GTCCACCCAAATGGGAAAGTATGCTAGAGAGTTTGAAAAAAATATTGCAAACTTATTCAGTAAAAAATATTGTGCATATC
TTAATTCAGGTTCCTCCGGCTTATTTCTATGCATTGACGCCTTGGATTTCCCGGAAGGTAGTGAAGTTATAACTCCTGCA
TTAACATTTTCAACAACTGTGGGTTGTTTGATTAAAAATAATCTGATCCCTAGTTTTGTTGATGTTGAACCGTTAACATT
TTGTATTGATGCAGATAAAATTGAAGATCAAATAACTCAAAAAACAGTCGCCATATTGGCTCCAAATCTATTAGGTAATC
TATGCGACTGGCCAAAGATAAGAGAAATAGCAAATAAACATAATTTAATAGTTATTGAAGATAGTGCTGATACTATTGGA
TCAACTATAGATAATGTAAATACTGGGAGATATACAGACATATCAATAACAAGCTTCTATGGTTCTCATATTATCAATTG
TGCAGGTAATGGAGGAGCAATTGCTTTAAACGACGAAAGAACTTTTAAGAAAGTTAAGTTGTTGCGCTCATGGGGGCGGA
GCTCATCATTATTCGATGAGAGTAACAGTGAATCAATTGAGAATAGATTTAATATCGATTTAGATGGTATTGAGTATGAT
TCCAAATTTGTTTTTGAAATGGTAGGTTACAATCTTGAAGGTAGTGAAATAGGAGCTGCTTTTGGATTAGAACAGTTGAA
GAAACTATCTCAAAATATTCAAACAAGAAATAAAAATTTTATTAGGCAACAAGAATTCTTTTCTAAATACCATAACTATT
TCTCAACCCCAAAAGAGTTACCTAATTCAAAAACTGCTTGGTTAGCTTATCCAATCTTAATAAAAGAGAATGCACCATTT
TCAAGAAGAGACTTACAAATATATCTAGAAAAAAATGAAATTCAAACTAGAGTTGTTTTTACTGGAAATGTATTAAGACA
ACCAATGTGCAAAGGAATTAAAAAAAAGATAGATAAAAGAGGGTATCATAATTCAGATAATGTTATGAAAAATGGTGTTT
TATTACCTGTTCATCATGGATTATCAGAAAGTATGTTTATAAGATTGCATGAGACAATTGAAGATTTTCTGAAAATGAAT
AAATGTTATGCGCTTTAA

Upstream 100 bases:

>100_bases
CAGAAAATTATGATTATTACTAATTTAATGAAAATCAAAAAATAATAAATTTGTGATAGTTTAAAATATAATTTGCTAGA
TTAACTAATTATTAATCAAA

Downstream 100 bases:

>100_bases
GAAATATGATTCCATCAGTGAGATATTATATTGGGGCATACCTTATTAACTTAACTTAAATTGAAAGCTATAATTCTTGC
TGGAGGAATGGGTACTAGGT

Product: NDP-hexose 3,4-dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MEVEKISYAKTVYGKEEINAVIKCLNESTQMGKYAREFEKNIANLFSKKYCAYLNSGSSGLFLCIDALDFPEGSEVITPA
LTFSTTVGCLIKNNLIPSFVDVEPLTFCIDADKIEDQITQKTVAILAPNLLGNLCDWPKIREIANKHNLIVIEDSADTIG
STIDNVNTGRYTDISITSFYGSHIINCAGNGGAIALNDERTFKKVKLLRSWGRSSSLFDESNSESIENRFNIDLDGIEYD
SKFVFEMVGYNLEGSEIGAAFGLEQLKKLSQNIQTRNKNFIRQQEFFSKYHNYFSTPKELPNSKTAWLAYPILIKENAPF
SRRDLQIYLEKNEIQTRVVFTGNVLRQPMCKGIKKKIDKRGYHNSDNVMKNGVLLPVHHGLSESMFIRLHETIEDFLKMN
KCYAL

Sequences:

>Translated_405_residues
MEVEKISYAKTVYGKEEINAVIKCLNESTQMGKYAREFEKNIANLFSKKYCAYLNSGSSGLFLCIDALDFPEGSEVITPA
LTFSTTVGCLIKNNLIPSFVDVEPLTFCIDADKIEDQITQKTVAILAPNLLGNLCDWPKIREIANKHNLIVIEDSADTIG
STIDNVNTGRYTDISITSFYGSHIINCAGNGGAIALNDERTFKKVKLLRSWGRSSSLFDESNSESIENRFNIDLDGIEYD
SKFVFEMVGYNLEGSEIGAAFGLEQLKKLSQNIQTRNKNFIRQQEFFSKYHNYFSTPKELPNSKTAWLAYPILIKENAPF
SRRDLQIYLEKNEIQTRVVFTGNVLRQPMCKGIKKKIDKRGYHNSDNVMKNGVLLPVHHGLSESMFIRLHETIEDFLKMN
KCYAL
>Mature_405_residues
MEVEKISYAKTVYGKEEINAVIKCLNESTQMGKYAREFEKNIANLFSKKYCAYLNSGSSGLFLCIDALDFPEGSEVITPA
LTFSTTVGCLIKNNLIPSFVDVEPLTFCIDADKIEDQITQKTVAILAPNLLGNLCDWPKIREIANKHNLIVIEDSADTIG
STIDNVNTGRYTDISITSFYGSHIINCAGNGGAIALNDERTFKKVKLLRSWGRSSSLFDESNSESIENRFNIDLDGIEYD
SKFVFEMVGYNLEGSEIGAAFGLEQLKKLSQNIQTRNKNFIRQQEFFSKYHNYFSTPKELPNSKTAWLAYPILIKENAPF
SRRDLQIYLEKNEIQTRVVFTGNVLRQPMCKGIKKKIDKRGYHNSDNVMKNGVLLPVHHGLSESMFIRLHETIEDFLKMN
KCYAL

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=278, Percent_Identity=26.6187050359712, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI2367285, Length=245, Percent_Identity=28.1632653061224, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 45872; Mature: 45872

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVEKISYAKTVYGKEEINAVIKCLNESTQMGKYAREFEKNIANLFSKKYCAYLNSGSSG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LFLCIDALDFPEGSEVITPALTFSTTVGCLIKNNLIPSFVDVEPLTFCIDADKIEDQITQ
EEEEEEECCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECHHHHHHHHH
KTVAILAPNLLGNLCDWPKIREIANKHNLIVIEDSADTIGSTIDNVNTGRYTDISITSFY
HHHHHHCCHHHHHCCCCHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCEEEEEEEEEC
GSHIINCAGNGGAIALNDERTFKKVKLLRSWGRSSSLFDESNSESIENRFNIDLDGIEYD
CCEEEEECCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCEEECCCCCC
SKFVFEMVGYNLEGSEIGAAFGLEQLKKLSQNIQTRNKNFIRQQEFFSKYHNYFSTPKEL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
PNSKTAWLAYPILIKENAPFSRRDLQIYLEKNEIQTRVVFTGNVLRQPMCKGIKKKIDKR
CCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHC
GYHNSDNVMKNGVLLPVHHGLSESMFIRLHETIEDFLKMNKCYAL
CCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEVEKISYAKTVYGKEEINAVIKCLNESTQMGKYAREFEKNIANLFSKKYCAYLNSGSSG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LFLCIDALDFPEGSEVITPALTFSTTVGCLIKNNLIPSFVDVEPLTFCIDADKIEDQITQ
EEEEEEECCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECHHHHHHHHH
KTVAILAPNLLGNLCDWPKIREIANKHNLIVIEDSADTIGSTIDNVNTGRYTDISITSFY
HHHHHHCCHHHHHCCCCHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCEEEEEEEEEC
GSHIINCAGNGGAIALNDERTFKKVKLLRSWGRSSSLFDESNSESIENRFNIDLDGIEYD
CCEEEEECCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCEEECCCCCC
SKFVFEMVGYNLEGSEIGAAFGLEQLKKLSQNIQTRNKNFIRQQEFFSKYHNYFSTPKEL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
PNSKTAWLAYPILIKENAPFSRRDLQIYLEKNEIQTRVVFTGNVLRQPMCKGIKKKIDKR
CCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHC
GYHNSDNVMKNGVLLPVHHGLSESMFIRLHETIEDFLKMNKCYAL
CCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]