Click here to switch to the map view.

The map label for this gene is xisA [H]

Identifier: 123965823

GI number: 123965823

Start: 525463

End: 526641

Strand: Reverse

Name: xisA [H]

Synonym: P9515_05881

Alternate gene names: 123965823

Gene position: 526641-525463 (Counterclockwise)

Preceding gene: 123965827

Following gene: 123965822

Centisome position: 30.9

GC content: 30.79

Gene sequence:

>1179_bases
ATGAACATAATTCACGAAATCAATAATGTCAATGATAAATTTGCTACCCAAGGAAGCAAACTTAAAATTGAAAAAAGGGG
CGAGAAATTAAATATTAGAGGTTCACTGCCTTCAAAAAAAAACGAACATGATTTTTCTGTTCAACGAATAGCTCTCGGTT
TAAATGCAGATTTTAATGGGTTAGAAGAAGCGAAAAAAAAATTACAATTGATAACTTTGCAATTAGAGTTAAATCAATTT
AATTGGATCAATTGGGTAAAAAAAACCGATAAGAAAGAAATTAAAAATGAATTTAAATTACTAGTCAAACTTAAGGAATT
TGAGGAATTTTTTTTCAAGGAAAACAAGAACGAATATTTATCAAGTACTAGAAAAACAACTTGGAGAAGTTCTTATAAGC
CATACCTTAAAAGAATAATTTCCATCCAAAGCGATTCAAATACTGAAGATTTAAATGATATTTTTATAGCAACATTAAAA
ACCTACAAAGAAGGTACTAGAAGCAGAAAACAATGTGCAACATCTCTTAGTGTTCTGGCGAAATTTTTAGGACATAAACT
TCCAGAAGATTGGAAATTAATGGCTAAAGGATATGGTTTAAATAAGGCAAGCTTTAGAGATCTTCCTTCTGATGAAGTAA
TTGAAGACCTATGGGATAAAATACCAAACAAATCATGGCAATATGTTTTTGGGCTTATGGCAACTTATGGCTTAAGAAAT
CATGAAGTTTTTTTTTGTGACCTAAGCTCATTAAACATTTATGGAGATAAAATCATAAGGGTTTTACCAACAACAAAAAC
AGGGGAACATCAGGTTTGGCCTTTCCATCCGAAATGGATAGATAAATTCGAACTTTGTAAATTGGGAAAAGATCCAGGAT
TGCTGCCAAATATCAATAGAGATCTTAAAGATACAACTTTGCAAAAAATTGGGAAAAAGATAACTGATCAATTTAAACGT
TATTCTCTAAATATCAAGCCTTATGATCTTAGACATGCTTGGGCAGTAAGGACAATTTTTTATGATTTACCTGATACAGT
AGCAGCCAGAATGATGGGTCATTCCGTTAGCCTTCATACTCAAACATATCACCATTGGATAACTAAACGTGATCAACAAC
AAGCAGTTAATAATGCTCTTTCAAAATATAAAAAACGTGAAATTTTCAAATCACTATAA

Upstream 100 bases:

>100_bases
CCAAGATTCATCAATAAGACGCCTATTTTTTCCATTTAAAGTATATGGATATTGAAAATAAACATTAGAAACGTCATTAT
AAGGTCAATTATATAAGTTA

Downstream 100 bases:

>100_bases
TGATAAATAAAGCACTTCTATGCCAAGTGAAGAACAAACCTCTTCTAGGAAAACAACCAGTCTAGATCTTCAGGCTAAAA
AACTTGGGATTGGAGGAAAG

Product: phage integrase family protein

Products: NA

Alternate protein names: NifD element site-specific recombinase [H]

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MNIIHEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKKNEHDFSVQRIALGLNADFNGLEEAKKKLQLITLQLELNQF
NWINWVKKTDKKEIKNEFKLLVKLKEFEEFFFKENKNEYLSSTRKTTWRSSYKPYLKRIISIQSDSNTEDLNDIFIATLK
TYKEGTRSRKQCATSLSVLAKFLGHKLPEDWKLMAKGYGLNKASFRDLPSDEVIEDLWDKIPNKSWQYVFGLMATYGLRN
HEVFFCDLSSLNIYGDKIIRVLPTTKTGEHQVWPFHPKWIDKFELCKLGKDPGLLPNINRDLKDTTLQKIGKKITDQFKR
YSLNIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALSKYKKREIFKSL

Sequences:

>Translated_392_residues
MNIIHEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKKNEHDFSVQRIALGLNADFNGLEEAKKKLQLITLQLELNQF
NWINWVKKTDKKEIKNEFKLLVKLKEFEEFFFKENKNEYLSSTRKTTWRSSYKPYLKRIISIQSDSNTEDLNDIFIATLK
TYKEGTRSRKQCATSLSVLAKFLGHKLPEDWKLMAKGYGLNKASFRDLPSDEVIEDLWDKIPNKSWQYVFGLMATYGLRN
HEVFFCDLSSLNIYGDKIIRVLPTTKTGEHQVWPFHPKWIDKFELCKLGKDPGLLPNINRDLKDTTLQKIGKKITDQFKR
YSLNIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALSKYKKREIFKSL
>Mature_392_residues
MNIIHEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKKNEHDFSVQRIALGLNADFNGLEEAKKKLQLITLQLELNQF
NWINWVKKTDKKEIKNEFKLLVKLKEFEEFFFKENKNEYLSSTRKTTWRSSYKPYLKRIISIQSDSNTEDLNDIFIATLK
TYKEGTRSRKQCATSLSVLAKFLGHKLPEDWKLMAKGYGLNKASFRDLPSDEVIEDLWDKIPNKSWQYVFGLMATYGLRN
HEVFFCDLSSLNIYGDKIIRVLPTTKTGEHQVWPFHPKWIDKFELCKLGKDPGLLPNINRDLKDTTLQKIGKKITDQFKR
YSLNIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALSKYKKREIFKSL

Specific function: Essential for DNA excision. Site specific recombinase necessary for the excision of the 11 kb nifD element during heterocyst differentiation [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xisA/xisC recombinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46028; Mature: 46028

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIHEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKKNEHDFSVQRIALGLNADFNG
CCCHHHHCCCCHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEHEEEECCCCCCH
LEEAKKKLQLITLQLELNQFNWINWVKKTDKKEIKNEFKLLVKLKEFEEFFFKENKNEYL
HHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SSTRKTTWRSSYKPYLKRIISIQSDSNTEDLNDIFIATLKTYKEGTRSRKQCATSLSVLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFLGHKLPEDWKLMAKGYGLNKASFRDLPSDEVIEDLWDKIPNKSWQYVFGLMATYGLRN
HHHCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
HEVFFCDLSSLNIYGDKIIRVLPTTKTGEHQVWPFHPKWIDKFELCKLGKDPGLLPNINR
CEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCHHHHHHCCCCCCCCCCCCC
DLKDTTLQKIGKKITDQFKRYSLNIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHT
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEH
QTYHHWITKRDQQQAVNNALSKYKKREIFKSL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIIHEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKKNEHDFSVQRIALGLNADFNG
CCCHHHHCCCCHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEHEEEECCCCCCH
LEEAKKKLQLITLQLELNQFNWINWVKKTDKKEIKNEFKLLVKLKEFEEFFFKENKNEYL
HHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SSTRKTTWRSSYKPYLKRIISIQSDSNTEDLNDIFIATLKTYKEGTRSRKQCATSLSVLA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFLGHKLPEDWKLMAKGYGLNKASFRDLPSDEVIEDLWDKIPNKSWQYVFGLMATYGLRN
HHHCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
HEVFFCDLSSLNIYGDKIIRVLPTTKTGEHQVWPFHPKWIDKFELCKLGKDPGLLPNINR
CEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCHHHHHHCCCCCCCCCCCCC
DLKDTTLQKIGKKITDQFKRYSLNIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHT
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEH
QTYHHWITKRDQQQAVNNALSKYKKREIFKSL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3006922; 11759840; 3144039 [H]