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The map label for this gene is csd [H]

Identifier: 123965711

GI number: 123965711

Start: 424270

End: 425445

Strand: Reverse

Name: csd [H]

Synonym: P9515_04761

Alternate gene names: 123965711

Gene position: 425445-424270 (Counterclockwise)

Preceding gene: 123965712

Following gene: 123965706

Centisome position: 24.96

GC content: 28.91

Gene sequence:

>1176_bases
ATGACAATTAATTTAAGAGAACAAATACCCGCATTAAAAAACAAATATTACTTCAATTATGGAGGTCAAGGACCATTACC
AAAATCTTCTCTAGAAGAAATAGTTAAAACTTGGGAAATCATTCAAGATATAGGACCATTTACAAATAATATGTGGCCTT
TTATTTATAAAGAAATATTGACTACAAAAAGAATTATTGCGCAAAAATTAGGTGTTAATTCAAAAAATGTAGCTTTAACT
GAGAATATCTCCTCTGGAATGATTTTGCCTTTTTGGGGTATAAAAGTAAAAGAGGGAGAAGAATTGTTAATAAGTGACTG
TGAACATCCTGGAGTAGTAGCTGCAAGTAGAGAATTTTGCAGAAGAAATAAATTAATATTCAAAATTTTACCAATCCAAA
AAATTAAAAATCTAAATGACGAAAATATAATTTTGGAGATTCAAAAAAATCTAAATAGTAAGACTAAGATCCTAATTATT
TCTCATATTTTGTGGAACTTTGGATATAAAATTCCTTTAAAAAAAATTTCTATCGAATTAAAAAATAATCGAGAAAATTC
TTATCTACTTGTTGATGGTGCTCAAACCTTTGGCCATATAAAAATTGAAGATGATGTTTTTTATTCTGATTTATATTCCA
TAACTTCTCATAAATGGGCATGTGGTCCTGAAGGGCTTGGAGCTATTTATGTCTCAGATAGATTTATTCATGAAACAGAT
CCAACAATAATTGGTTGGAAATCATTAAAAAAAGAACAAGGAATTTATGAGCCGCCAGATAATCTTTTTCATGAAGATGC
AAGGAAGTTTGAAGTGGCTACATCTTGTATTCCTTTACTTGCTGGGCTCAGGAATTCTTTAGATCTTTTGGATAAAGATT
GCCATGAAAAAGAAAAAACCAAAAACATCAAAAGATTAAGTGGAAAACTTTGGGATAAATTAAATCAATTAAACGGAGTT
GAATTAGTTTTAGAAAAAAAATACTTAAATGGGATAGTCAGCTTTAATATCGGAAATGTTGTAGATAAGGACAAATTTGT
GAAGAGACTTGGAGAACAGAAAATTTGGATTAGAGTTTTAGAAGATCCAAAATGGTTTAGAGCATGTGTACATCAAATGA
CAACAGAAGCTGAGATTAATTTACTCTCTAAAGAAATTAAAAAAATACTGACTTAA

Upstream 100 bases:

>100_bases
GTAATGAACCTTGGAAAGTTATTGAAGATATTGAATTTAGAACAGTTACTTTAGTAGGGAATATTTAGTCCTTCTCAAGA
AATTTAATTTAAAAATTTTA

Downstream 100 bases:

>100_bases
AGCTTGTAACTAGTCTTCATTGTCTTAATTATCGATTTTTTAGGATCTTTATCTGGATAACAATTTACAATTTTATATTT
TCATCCTTTTCTATCCGTTT

Product: putative L-cysteine/cystine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MTINLREQIPALKNKYYFNYGGQGPLPKSSLEEIVKTWEIIQDIGPFTNNMWPFIYKEILTTKRIIAQKLGVNSKNVALT
ENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEIQKNLNSKTKILII
SHILWNFGYKIPLKKISIELKNNRENSYLLVDGAQTFGHIKIEDDVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
PTIIGWKSLKKEQGIYEPPDNLFHEDARKFEVATSCIPLLAGLRNSLDLLDKDCHEKEKTKNIKRLSGKLWDKLNQLNGV
ELVLEKKYLNGIVSFNIGNVVDKDKFVKRLGEQKIWIRVLEDPKWFRACVHQMTTEAEINLLSKEIKKILT

Sequences:

>Translated_391_residues
MTINLREQIPALKNKYYFNYGGQGPLPKSSLEEIVKTWEIIQDIGPFTNNMWPFIYKEILTTKRIIAQKLGVNSKNVALT
ENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEIQKNLNSKTKILII
SHILWNFGYKIPLKKISIELKNNRENSYLLVDGAQTFGHIKIEDDVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
PTIIGWKSLKKEQGIYEPPDNLFHEDARKFEVATSCIPLLAGLRNSLDLLDKDCHEKEKTKNIKRLSGKLWDKLNQLNGV
ELVLEKKYLNGIVSFNIGNVVDKDKFVKRLGEQKIWIRVLEDPKWFRACVHQMTTEAEINLLSKEIKKILT
>Mature_390_residues
TINLREQIPALKNKYYFNYGGQGPLPKSSLEEIVKTWEIIQDIGPFTNNMWPFIYKEILTTKRIIAQKLGVNSKNVALTE
NISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLIFKILPIQKIKNLNDENIILEIQKNLNSKTKILIIS
HILWNFGYKIPLKKISIELKNNRENSYLLVDGAQTFGHIKIEDDVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETDP
TIIGWKSLKKEQGIYEPPDNLFHEDARKFEVATSCIPLLAGLRNSLDLLDKDCHEKEKTKNIKRLSGKLWDKLNQLNGVE
LVLEKKYLNGIVSFNIGNVVDKDKFVKRLGEQKIWIRVLEDPKWFRACVHQMTTEAEINLLSKEIKKILT

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=330, Percent_Identity=23.3333333333333, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 45054; Mature: 44923

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTINLREQIPALKNKYYFNYGGQGPLPKSSLEEIVKTWEIIQDIGPFTNNMWPFIYKEIL
CCCCHHHHCCHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TTKRIIAQKLGVNSKNVALTENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFC
HHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECEEECCCCCCEEECCCCCCEEHHHHHHH
RRNKLIFKILPIQKIKNLNDENIILEIQKNLNSKTKILIISHILWNFGYKIPLKKISIEL
HCCCEEEEEECHHHHCCCCCCCEEEEEECCCCCCEEEEEHHHHHHHCCCCCEEEEEEEEE
KNNRENSYLLVDGAQTFGHIKIEDDVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
ECCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEEEECEEEECCC
PTIIGWKSLKKEQGIYEPPDNLFHEDARKFEVATSCIPLLAGLRNSLDLLDKDCHEKEKT
CCEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNIKRLSGKLWDKLNQLNGVELVLEKKYLNGIVSFNIGNVVDKDKFVKRLGEQKIWIRVL
HHHHHHHHHHHHHHHHCCCHHEEEEHHHHCCEEEECCCCCCCHHHHHHHHCCCEEEEEEE
EDPKWFRACVHQMTTEAEINLLSKEIKKILT
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TINLREQIPALKNKYYFNYGGQGPLPKSSLEEIVKTWEIIQDIGPFTNNMWPFIYKEIL
CCCHHHHCCHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TTKRIIAQKLGVNSKNVALTENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFC
HHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECEEECCCCCCEEECCCCCCEEHHHHHHH
RRNKLIFKILPIQKIKNLNDENIILEIQKNLNSKTKILIISHILWNFGYKIPLKKISIEL
HCCCEEEEEECHHHHCCCCCCCEEEEEECCCCCCEEEEEHHHHHHHCCCCCEEEEEEEEE
KNNRENSYLLVDGAQTFGHIKIEDDVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
ECCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEEEECEEEECCC
PTIIGWKSLKKEQGIYEPPDNLFHEDARKFEVATSCIPLLAGLRNSLDLLDKDCHEKEKT
CCEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNIKRLSGKLWDKLNQLNGVELVLEKKYLNGIVSFNIGNVVDKDKFVKRLGEQKIWIRVL
HHHHHHHHHHHHHHHHCCCHHEEEEHHHHCCEEEECCCCCCCHHHHHHHHCCCEEEEEEE
EDPKWFRACVHQMTTEAEINLLSKEIKKILT
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]