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The map label for this gene is petD [H]

Identifier: 123965593

GI number: 123965593

Start: 329862

End: 330344

Strand: Direct

Name: petD [H]

Synonym: P9515_03581

Alternate gene names: 123965593

Gene position: 329862-330344 (Clockwise)

Preceding gene: 123965592

Following gene: 123965599

Centisome position: 19.36

GC content: 35.4

Gene sequence:

>483_bases
ATGTCTACTCTAAAAAAACCCGATTTATCAGATCCGAAATTAAGAGCTAAATTAGCTAAAGGTATGGGTCACAATTATTA
CGGTGAACCAGCTTGGCCAAACGATCTTTTATACATTTTCCCTGTTGTAATACTGGGAACAATAGCTTGTGTTGTGGGGC
TGGCTGTTCTAGATCCGGCCATGTTGGGAGATAAGGCTAATCCATTTGCCACTCCTTTAGAAATACTTCCTGAATGGTAT
CTTTATCCTGTGTTTCAAATACTTAGGGTAGTTCCAAATAAGTTACTTGGAATAGCTCTTCAAACATTAATTCCTCTTGG
ATTAATGATCTTGCCTTTTATAGAAAATGTAAACAAATTCTCTAATCCTTTTAGAAGACCAGTAGCGATGGTGGTTTTTC
TTTTTGGAACTTTTTTAACTATTTACCTTGGAATAGGTGCTTGCTTACCAATTGATAAGTCTCTAACTTTAGGATTATTT
TAA

Upstream 100 bases:

>100_bases
TTTATGCTTATGCATTTTCTTATGATTCGTAAACAAGGTATTTCAGGTCCGCTATAACCCCTTATAATTCTAATAATTTA
AATTTTAAGTATAGTTTTAT

Downstream 100 bases:

>100_bases
GGTCATTTAGAGGTCAAACATATCCAAATCATTATTCTCTTCTCTTAGGAAATGATGCATTAATAAAAAACCAACTATTG
TCCATGTTTGATAAGTTCTT

Product: cytochrome b6-f complex subunit IV

Products: NA

Alternate protein names: 17 kDa polypeptide [H]

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSTLKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMLGDKANPFATPLEILPEWY
LYPVFQILRVVPNKLLGIALQTLIPLGLMILPFIENVNKFSNPFRRPVAMVVFLFGTFLTIYLGIGACLPIDKSLTLGLF

Sequences:

>Translated_160_residues
MSTLKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMLGDKANPFATPLEILPEWY
LYPVFQILRVVPNKLLGIALQTLIPLGLMILPFIENVNKFSNPFRRPVAMVVFLFGTFLTIYLGIGACLPIDKSLTLGLF
>Mature_159_residues
STLKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMLGDKANPFATPLEILPEWYL
YPVFQILRVVPNKLLGIALQTLIPLGLMILPFIENVNKFSNPFRRPVAMVVFLFGTFLTIYLGIGACLPIDKSLTLGLF

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005870 [H]

Pfam domain/function: PF00032 Cytochrom_B_C [H]

EC number: NA

Molecular weight: Translated: 17674; Mature: 17542

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPA
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGDKANPFATPLEILPEWYLYPVFQILRVVPNKLLGIALQTLIPLGLMILPFIENVNKF
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNPFRRPVAMVVFLFGTFLTIYLGIGACLPIDKSLTLGLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
STLKKPDLSDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPA
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MLGDKANPFATPLEILPEWYLYPVFQILRVVPNKLLGIALQTLIPLGLMILPFIENVNKF
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNPFRRPVAMVVFLFGTFLTIYLGIGACLPIDKSLTLGLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA