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The map label for this gene is kaiC [H]

Identifier: 123969075

GI number: 123969075

Start: 1323503

End: 1325032

Strand: Reverse

Name: kaiC [H]

Synonym: A9601_15431

Alternate gene names: 123969075

Gene position: 1325032-1323503 (Counterclockwise)

Preceding gene: 123969076

Following gene: 123969072

Centisome position: 79.35

GC content: 34.51

Gene sequence:

>1530_bases
ATGAATGATAAGAAATTTGGCAAATCAAATAAAATGCAAGTACAAAAATTACCAACTGGCATAGAAGGCTTTGATGATGT
TTGTAGGGGTGGTTTGCCTGTATCTCGAAGTACACTCGTTAGTGGTACCTCAGGAACGGGTAAAACTGTTTTTTCACTGC
AATACTTACACCATGGAATTTGTAATTTTGATGAGCCTGGTATCTTCGTAACATTTGAGGAATCACCTTTAGACATCATT
AGGAATGCTGCGAGTTTTGGGTGGGATTTACAAGAATTAATTGATCAAAATAAACTTTTTATTTTGGATGCTTCTCCTGA
CCCTGATGGTCAGGATGTTGCAGGTAACTTTGACTTGTCTGGTCTTATTGAGAGAATTAGTTATGCGATCAGAAAATATA
AAGCTAAAAGAGTTGCAATAGATTCAATAACTGCAGTCTTTCAACAATATGATGCTATTTACGTTGTGAGAAGAGAAATA
TTTAGACTCATAGCAAGATTAAAAGAGATAGGTGTGACAACAGTAATGACTACAGAGAGGGTTGATGATTATGGACCTAT
AGCTAGATATGGAGTAGAAGAATTTGTATCTGATAATGTTGTTTTACTAAGAAATGTGCTTGAGTCAGAGAAGAGAAGAA
GAACTTTAGAAGTTTTGAAGTTAAGAGGTACTGTACATATGAAAGGTGAATATCCATTCACCATGGGGATTGATGGGATA
AGTGTGTTCGCCCTCGGAGCAATGAGATTAACGCAGAGATCCTCAAATATTAGAATTAGCTCTGGAGTTAAAGATCTTGA
TGATATGTGTGGTGGAGGATATTTTCAGGATTCCATCATTCTCGCTACTGGAGCTACTGGTACAGGAAAAACAATGCTTG
TATCAAAATTTGTTGAAGATGCTTATAACAATAATGAAAGAGCAATACTTTTTGCATATGAAGAATCTAGGGCTCAATTG
CTTAGGAATGCAACTAGCTGGGGAATAGATTTTGAAAAAATGGAAAGTGATGGGTTATTGAAAATTATTTGTGCATATCC
TGAATCAACTGGTTTAGAAGATCACTTACAAATTATAAAAACGCAAATTAATCAATTTAAACCAAAAAGGATGGCAATTG
ATTCTCTCTCTGCATTAGCCAGAGGTGTAAGTTTGAATGCATTTAGACAGTTTGTAATTGCTGTTACTGGTTATACAAAA
CAAGAGGAGATAGCAGGCTTCTTTACTAATACTGCAGAAGAATTTATGGGAAGTCATTCTATAACTGATTCTCATATCTC
AACAATTACAGATACCATATTGTTACTTCAATATGTAGAAATAAAAGGTGAGATGGCAAGAGCTCTAAATGTTTTTAAAA
TGCGGGGATCATGGCATGATAAACGAATAAGAGAATTTATCATTACAAATAGTGGCCCAGAAATAAGAGATTCTTTTTCT
AATTTTGAACAAATATTTAGCGGCGCCCCTCACAGAATTGTACCTGATCAAAATGTTCAAAATGTTTTTAAAGGATTAGA
TAATAATTAG

Upstream 100 bases:

>100_bases
TGATGAATTAACTGAAACTGAATATAGTGGAGATAAATAGAACATTAAAAACTTTCAAAATTCAAAATTTATTTTACTTT
TGTTTAATTAGTTTAAAACT

Downstream 100 bases:

>100_bases
ATAATTTCCTTAATTTCAGAAGCGGAGAAAGAATCTGAATTGTTAATAGCTTTTGTCAATAATTCATCTTTATCAGATTG
TGCTAAAGCTAAATCAAACC

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MNDKKFGKSNKMQVQKLPTGIEGFDDVCRGGLPVSRSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDII
RNAASFGWDLQELIDQNKLFILDASPDPDGQDVAGNFDLSGLIERISYAIRKYKAKRVAIDSITAVFQQYDAIYVVRREI
FRLIARLKEIGVTTVMTTERVDDYGPIARYGVEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGIDGI
SVFALGAMRLTQRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYNNNERAILFAYEESRAQL
LRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQINQFKPKRMAIDSLSALARGVSLNAFRQFVIAVTGYTK
QEEIAGFFTNTAEEFMGSHSITDSHISTITDTILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNSGPEIRDSFS
NFEQIFSGAPHRIVPDQNVQNVFKGLDNN

Sequences:

>Translated_509_residues
MNDKKFGKSNKMQVQKLPTGIEGFDDVCRGGLPVSRSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDII
RNAASFGWDLQELIDQNKLFILDASPDPDGQDVAGNFDLSGLIERISYAIRKYKAKRVAIDSITAVFQQYDAIYVVRREI
FRLIARLKEIGVTTVMTTERVDDYGPIARYGVEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGIDGI
SVFALGAMRLTQRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYNNNERAILFAYEESRAQL
LRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQINQFKPKRMAIDSLSALARGVSLNAFRQFVIAVTGYTK
QEEIAGFFTNTAEEFMGSHSITDSHISTITDTILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNSGPEIRDSFS
NFEQIFSGAPHRIVPDQNVQNVFKGLDNN
>Mature_509_residues
MNDKKFGKSNKMQVQKLPTGIEGFDDVCRGGLPVSRSTLVSGTSGTGKTVFSLQYLHHGICNFDEPGIFVTFEESPLDII
RNAASFGWDLQELIDQNKLFILDASPDPDGQDVAGNFDLSGLIERISYAIRKYKAKRVAIDSITAVFQQYDAIYVVRREI
FRLIARLKEIGVTTVMTTERVDDYGPIARYGVEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGIDGI
SVFALGAMRLTQRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVEDAYNNNERAILFAYEESRAQL
LRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIKTQINQFKPKRMAIDSLSALARGVSLNAFRQFVIAVTGYTK
QEEIAGFFTNTAEEFMGSHSITDSHISTITDTILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNSGPEIRDSFS
NFEQIFSGAPHRIVPDQNVQNVFKGLDNN

Specific function: Core component of the kaiBC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiBC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 57006; Mature: 57006

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKKFGKSNKMQVQKLPTGIEGFDDVCRGGLPVSRSTLVSGTSGTGKTVFSLQYLHHGI
CCCCCCCCCCCCCHHHCCCCCCCHHHHHCCCCCCCCCCEECCCCCCCCHHEEHHHHHCCC
CNFDEPGIFVTFEESPLDIIRNAASFGWDLQELIDQNKLFILDASPDPDGQDVAGNFDLS
CCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
GLIERISYAIRKYKAKRVAIDSITAVFQQYDAIYVVRREIFRLIARLKEIGVTTVMTTER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHH
VDDYGPIARYGVEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGIDGI
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCHH
SVFALGAMRLTQRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVED
HHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEECCCEEEEECCCCCCHHHHHHHHHHH
AYNNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIK
HHCCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHH
TQINQFKPKRMAIDSLSALARGVSLNAFRQFVIAVTGYTKQEEIAGFFTNTAEEFMGSHS
HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
ITDSHISTITDTILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNSGPEIRDSFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHH
NFEQIFSGAPHRIVPDQNVQNVFKGLDNN
HHHHHHCCCCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MNDKKFGKSNKMQVQKLPTGIEGFDDVCRGGLPVSRSTLVSGTSGTGKTVFSLQYLHHGI
CCCCCCCCCCCCCHHHCCCCCCCHHHHHCCCCCCCCCCEECCCCCCCCHHEEHHHHHCCC
CNFDEPGIFVTFEESPLDIIRNAASFGWDLQELIDQNKLFILDASPDPDGQDVAGNFDLS
CCCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
GLIERISYAIRKYKAKRVAIDSITAVFQQYDAIYVVRREIFRLIARLKEIGVTTVMTTER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHH
VDDYGPIARYGVEEFVSDNVVLLRNVLESEKRRRTLEVLKLRGTVHMKGEYPFTMGIDGI
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCHH
SVFALGAMRLTQRSSNIRISSGVKDLDDMCGGGYFQDSIILATGATGTGKTMLVSKFVED
HHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEECCCEEEEECCCCCCHHHHHHHHHHH
AYNNNERAILFAYEESRAQLLRNATSWGIDFEKMESDGLLKIICAYPESTGLEDHLQIIK
HHCCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHHH
TQINQFKPKRMAIDSLSALARGVSLNAFRQFVIAVTGYTKQEEIAGFFTNTAEEFMGSHS
HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
ITDSHISTITDTILLLQYVEIKGEMARALNVFKMRGSWHDKRIREFIITNSGPEIRDSFS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHH
NFEQIFSGAPHRIVPDQNVQNVFKGLDNN
HHHHHHCCCCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]