Click here to switch to the map view.

The map label for this gene is yjfH [C]

Identifier: 123968445

GI number: 123968445

Start: 783033

End: 784040

Strand: Direct

Name: yjfH [C]

Synonym: A9601_09121

Alternate gene names: 123968445

Gene position: 783033-784040 (Clockwise)

Preceding gene: 123968444

Following gene: 123968446

Centisome position: 46.89

GC content: 32.74

Gene sequence:

>1008_bases
ATGAAAAACTCCTCTAAAAAAAAATTCCCAGGAAAAAATAATAAAGAATACAAAAAAAACTCAGATTTTGGTTATTACCC
AAAAAATAAAAATCGTTCTGAAAAAATTGATAGATTATCGAACAATTCTGATAAATATAAGAATGTTGAAAATTTAAATA
AAAATGAAAAGGATAGTACTTTTTCATCTTTAAAAAGAAAAAAGCCAACATTTAAATCTAATATAGGTCTTCATAATAAA
AATCCTGATATTAATCAAGAGTTTAATAACAAGAAAAATTTTGATGATTGGATATGGGGCAAACATTCGGTTTATGAGGC
TCTTAGTAGTGAAAGAGCAATTAATAGGATTTGGTGTACATCGGAAATCTTTTCTTCAGATAAATTCTATATTTTGCTTA
AGGATCTTAAATCAAAAGGAGTGCTTATTGAAGAAGTTTCTTGGAACAGGCTTTCGCAATTAACTTATGGTGCTTCACAT
CAAGGCATCGCATTACAGTTGGCATGTTCTAGAACAATATCCCTAGAACAATTAATCGATTTTTCTAGACACAACTGCGC
AAATCCCATAATACTTGCATTGGATGGTATTACTGATCCGCATAATGTTGGTGCGATCATTAGATCAGCGGAAGCATTTG
ATTGCAAGGGCATCATCATTCCTCAGAGAAGATCCGCTGGATTGACAGGAACAGTAGCTAAAGTGGCTGCAGGAGCCTTA
GAACACGTGCAAGTAAGTAGAGTTGTAAACCTAAATAGAGCACTTGAGGAACTTAAGAAAAATGGTTTTATTGTTGTTGG
CCTATCTGGAGATGGCCAATTATCTATCTCAAATTTTCTTGAAAAAGCCCCTTTGGTAGTTATAGTCGGTTCAGAAGAAA
AAGGTATTTCTTTACTTACTCAAAAAAAATGCGATTTTCTATTAAGTATTCCCCTTAGAGGTAAGACTTCAAGTTTAAAT
GCATCTGTAGCGGCCGCTATATCACTATTTCACTTGACAAGTATATAA

Upstream 100 bases:

>100_bases
GCAACTGGTTTTGAAACTCTTATTGGCTGGCTATTTTTAAAAGATCCTCAAAGGCTATCAAAACTTTTTGAATATTTAGA
ATTAAAAATAGATTGAATCT

Downstream 100 bases:

>100_bases
ATTTATTTGTTAATAATCATTGTTTTTAAAGCCCTCTAAAATGTTGTTGTTTCCGTATATTTATATGTTTAATAAAAATT
TATTGAATTTTCGCTACAAA

Product: RNA methyltransferase TrmH, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKNSSKKKFPGKNNKEYKKNSDFGYYPKNKNRSEKIDRLSNNSDKYKNVENLNKNEKDSTFSSLKRKKPTFKSNIGLHNK
NPDINQEFNNKKNFDDWIWGKHSVYEALSSERAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTYGASH
QGIALQLACSRTISLEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGAL
EHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEKGISLLTQKKCDFLLSIPLRGKTSSLN
ASVAAAISLFHLTSI

Sequences:

>Translated_335_residues
MKNSSKKKFPGKNNKEYKKNSDFGYYPKNKNRSEKIDRLSNNSDKYKNVENLNKNEKDSTFSSLKRKKPTFKSNIGLHNK
NPDINQEFNNKKNFDDWIWGKHSVYEALSSERAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTYGASH
QGIALQLACSRTISLEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGAL
EHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEKGISLLTQKKCDFLLSIPLRGKTSSLN
ASVAAAISLFHLTSI
>Mature_335_residues
MKNSSKKKFPGKNNKEYKKNSDFGYYPKNKNRSEKIDRLSNNSDKYKNVENLNKNEKDSTFSSLKRKKPTFKSNIGLHNK
NPDINQEFNNKKNFDDWIWGKHSVYEALSSERAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTYGASH
QGIALQLACSRTISLEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGAL
EHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEKGISLLTQKKCDFLLSIPLRGKTSSLN
ASVAAAISLFHLTSI

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=218, Percent_Identity=29.8165137614679, Blast_Score=86, Evalue=7e-17,
Organism=Escherichia coli, GI1790623, Length=242, Percent_Identity=36.7768595041322, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1788935, Length=223, Percent_Identity=24.2152466367713, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=254, Percent_Identity=26.3779527559055, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324775, Length=304, Percent_Identity=27.9605263157895, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 37316; Mature: 37316

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSSKKKFPGKNNKEYKKNSDFGYYPKNKNRSEKIDRLSNNSDKYKNVENLNKNEKDST
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHH
FSSLKRKKPTFKSNIGLHNKNPDINQEFNNKKNFDDWIWGKHSVYEALSSERAINRIWCT
HHHHHHCCCCHHHCCCCCCCCCCCCCHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHEEC
SEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTYGASHQGIALQLACSRTISLEQLID
HHHHCCCCEEEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
FSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGAL
HHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
EHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEKGISLLT
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEHHHHHHHCCEEEEECCCCCCCHHHH
QKKCDFLLSIPLRGKTSSLNASVAAAISLFHLTSI
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNSSKKKFPGKNNKEYKKNSDFGYYPKNKNRSEKIDRLSNNSDKYKNVENLNKNEKDST
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHH
FSSLKRKKPTFKSNIGLHNKNPDINQEFNNKKNFDDWIWGKHSVYEALSSERAINRIWCT
HHHHHHCCCCHHHCCCCCCCCCCCCCHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHEEC
SEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTYGASHQGIALQLACSRTISLEQLID
HHHHCCCCEEEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
FSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGAL
HHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
EHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEKGISLLT
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEHHHHHHHCCEEEEECCCCCCCHHHH
QKKCDFLLSIPLRGKTSSLNASVAAAISLFHLTSI
HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]