Click here to switch to the map view.

The map label for this gene is tsf [H]

Identifier: 123968350

GI number: 123968350

Start: 701707

End: 702363

Strand: Direct

Name: tsf [H]

Synonym: A9601_08151

Alternate gene names: 123968350

Gene position: 701707-702363 (Clockwise)

Preceding gene: 123968349

Following gene: 123968351

Centisome position: 42.02

GC content: 36.23

Gene sequence:

>657_bases
ATGGGAAACATTACAGCAAAACTTGTAAAAGATCTTAGAGACAAAACTGGTGCAGGAATGATGGACTGCAAAAAAGCACT
TAACGAAACTGAAGGGAATCTAGATAAAGCTTTGGAATGGTTAAGAAAGAAAGGCATAGCTAGTGCTGAAAAGAAATCGG
GAAGAGTAGCGGCTGAAGGGTCAATTGGCAGTTATATACATACTGGATCAAGAGTTGGAGTTTTACTAGAGTTAAATTGT
GAAACTGATTTTGTTGCTAGAGGTGATATTTTTCAATCTCTTTTGAAGGATGTCTCAATGCAAGTAGCAGCATGCCCAAA
TGTTGAGTATGTATCAATTGATGAAATACCAGAAGATGTTGTGGAAAAAGAAAAGCAGATTGAAATGGGTAGGGATGATT
TATCTGGAAAACCAGAACAAATTAAAGAAAAAATAGTTGAAGGGAGAATAGCAAAAAGACTTAATGAGCTTGTTCTGCTC
TCACAACCCTACATTAAAGATAGTTCTCTAACAGTTGAGGATCTTGTTAAACAAGCAGCTGCAAAAATTGGGGAAAATAT
CAAAGTAAGACGCTTTACAAGATATACATTGGGTGAAGGTATCGAAAAAAATCAGATGGACTTTGCTGAAGAGGTCGCAT
CAATGCAAAAAAACTAG

Upstream 100 bases:

>100_bases
TTGCAGATGCCATAAATGAGGGTAGAAAGGGCTCTAATGCTGAAAGGAAAAATTAAGCTCTAATTTAAAACTTACTATTC
ACTATTTTTTATTACTTCAA

Downstream 100 bases:

>100_bases
TCACTTTAATGATTTGAATAATTTCAATAATTACATAGATATAAATAAAATTAATTCTCAATTAGAGAGAGCAGACATAC
AAAAAGGACTATTAACTAGA

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MGNITAKLVKDLRDKTGAGMMDCKKALNETEGNLDKALEWLRKKGIASAEKKSGRVAAEGSIGSYIHTGSRVGVLLELNC
ETDFVARGDIFQSLLKDVSMQVAACPNVEYVSIDEIPEDVVEKEKQIEMGRDDLSGKPEQIKEKIVEGRIAKRLNELVLL
SQPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVASMQKN

Sequences:

>Translated_218_residues
MGNITAKLVKDLRDKTGAGMMDCKKALNETEGNLDKALEWLRKKGIASAEKKSGRVAAEGSIGSYIHTGSRVGVLLELNC
ETDFVARGDIFQSLLKDVSMQVAACPNVEYVSIDEIPEDVVEKEKQIEMGRDDLSGKPEQIKEKIVEGRIAKRLNELVLL
SQPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVASMQKN
>Mature_217_residues
GNITAKLVKDLRDKTGAGMMDCKKALNETEGNLDKALEWLRKKGIASAEKKSGRVAAEGSIGSYIHTGSRVGVLLELNCE
TDFVARGDIFQSLLKDVSMQVAACPNVEYVSIDEIPEDVVEKEKQIEMGRDDLSGKPEQIKEKIVEGRIAKRLNELVLLS
QPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVASMQKN

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome [H]

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family [H]

Homologues:

Organism=Homo sapiens, GI291084498, Length=97, Percent_Identity=43.298969072165, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI291084502, Length=97, Percent_Identity=43.298969072165, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI291084500, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI171846268, Length=97, Percent_Identity=43.298969072165, Blast_Score=67, Evalue=9e-12,
Organism=Escherichia coli, GI1786366, Length=166, Percent_Identity=41.566265060241, Blast_Score=103, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17561440, Length=98, Percent_Identity=39.7959183673469, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI19921466, Length=123, Percent_Identity=35.7723577235772, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449 [H]

Pfam domain/function: PF00889 EF_TS; PF00627 UBA [H]

EC number: NA

Molecular weight: Translated: 24150; Mature: 24019

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS01126 EF_TS_1 ; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNITAKLVKDLRDKTGAGMMDCKKALNETEGNLDKALEWLRKKGIASAEKKSGRVAAEG
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHCCCEEECC
SIGSYIHTGSRVGVLLELNCETDFVARGDIFQSLLKDVSMQVAACPNVEYVSIDEIPEDV
CCCHHHCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHCCCCCCEEEHHHCCHHH
VEKEKQIEMGRDDLSGKPEQIKEKIVEGRIAKRLNELVLLSQPYIKDSSLTVEDLVKQAA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
AKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVASMQKN
HHHCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GNITAKLVKDLRDKTGAGMMDCKKALNETEGNLDKALEWLRKKGIASAEKKSGRVAAEG
CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHCCCEEECC
SIGSYIHTGSRVGVLLELNCETDFVARGDIFQSLLKDVSMQVAACPNVEYVSIDEIPEDV
CCCHHHCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHCCCCCCEEEHHHCCHHH
VEKEKQIEMGRDDLSGKPEQIKEKIVEGRIAKRLNELVLLSQPYIKDSSLTVEDLVKQAA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
AKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVASMQKN
HHHCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA