Click here to switch to the map view.

The map label for this gene is thf1 [H]

Identifier: 123968337

GI number: 123968337

Start: 690123

End: 690779

Strand: Reverse

Name: thf1 [H]

Synonym: A9601_08021

Alternate gene names: 123968337

Gene position: 690779-690123 (Counterclockwise)

Preceding gene: 123968339

Following gene: 123968335

Centisome position: 41.37

GC content: 28.16

Gene sequence:

>657_bases
TTGAGTCAACATACGCTAACCTTATTAAGGTTTACATATAAAAAATTGAAAGAAAAATTGACTGTTTCAGATAGCAAAAA
GTTATTTCATGAAAAATTTCCTTACGTCATTCCCGGTTTATACAAAAGAATAGTTGATGAAATGCTTGTCGAACTTAATC
TTTTGAACCATCAAAATGAATTTACGCTGGATTATCTCTTTTGTGTCGGCCTCACCGAAACATTCAAAGAATTAATGAAA
GGATATCAACCTGAAAAACACTTGGATCTACTTTTTGAATCCTTATGCAGTTCTACAAATTTTGAAGCGAAGGAAATTAA
TGAAATATCTAAAAAGTCTCAAAAAGAATTAGTGGATAAAACATCTAAAGATATTTTAAAATTATTAGTAGAGAAAAATA
ATTCTAAACTTTATCCTTCAAGGATCTTGAACTTAGGGATATATACATTAATTTCAAACTCCCAAGATTTCAAAGAGAAA
AATGAATCAGATAAAAATAAGATGACCTCTGATATTTTTGAGAAGTTAAGCTTATCTGCTAATAAAGCAGAAAAAGATAT
TGGAATCTACAAAAGCAGCATATCAAAAATGGAACAAGCAAAAGAATTAATTGAAGAGCTCAGAATTAAGGACAAGAATA
AAAACCAAAAAAAATAA

Upstream 100 bases:

>100_bases
AGTCTCGAATAAATATCAAAGACTCTTTCACTACCGCCCGATTCTTCTAAAACTAAAGGGATCATAATAATATTTATCTG
TTTATTAGATATTAACGATA

Downstream 100 bases:

>100_bases
TAACTATTTTTTTAATCTTCTTTTATCTTTCCAAGAGACATAAGATATATAAATTACAGCTAATGTTATGAATATGAGCA
AAACAAACGATGTTAATATA

Product: Thf1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSQHTLTLLRFTYKKLKEKLTVSDSKKLFHEKFPYVIPGLYKRIVDEMLVELNLLNHQNEFTLDYLFCVGLTETFKELMK
GYQPEKHLDLLFESLCSSTNFEAKEINEISKKSQKELVDKTSKDILKLLVEKNNSKLYPSRILNLGIYTLISNSQDFKEK
NESDKNKMTSDIFEKLSLSANKAEKDIGIYKSSISKMEQAKELIEELRIKDKNKNQKK

Sequences:

>Translated_218_residues
MSQHTLTLLRFTYKKLKEKLTVSDSKKLFHEKFPYVIPGLYKRIVDEMLVELNLLNHQNEFTLDYLFCVGLTETFKELMK
GYQPEKHLDLLFESLCSSTNFEAKEINEISKKSQKELVDKTSKDILKLLVEKNNSKLYPSRILNLGIYTLISNSQDFKEK
NESDKNKMTSDIFEKLSLSANKAEKDIGIYKSSISKMEQAKELIEELRIKDKNKNQKK
>Mature_217_residues
SQHTLTLLRFTYKKLKEKLTVSDSKKLFHEKFPYVIPGLYKRIVDEMLVELNLLNHQNEFTLDYLFCVGLTETFKELMKG
YQPEKHLDLLFESLCSSTNFEAKEINEISKKSQKELVDKTSKDILKLLVEKNNSKLYPSRILNLGIYTLISNSQDFKEKN
ESDKNKMTSDIFEKLSLSANKAEKDIGIYKSSISKMEQAKELIEELRIKDKNKNQKK

Specific function: May be involved in photosynthetic membrane biogenesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the THF1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017499 [H]

Pfam domain/function: PF11264 ThylakoidFormat [H]

EC number: NA

Molecular weight: Translated: 25516; Mature: 25385

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQHTLTLLRFTYKKLKEKLTVSDSKKLFHEKFPYVIPGLYKRIVDEMLVELNLLNHQNE
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
FTLDYLFCVGLTETFKELMKGYQPEKHLDLLFESLCSSTNFEAKEINEISKKSQKELVDK
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
TSKDILKLLVEKNNSKLYPSRILNLGIYTLISNSQDFKEKNESDKNKMTSDIFEKLSLSA
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCH
NKAEKDIGIYKSSISKMEQAKELIEELRIKDKNKNQKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQHTLTLLRFTYKKLKEKLTVSDSKKLFHEKFPYVIPGLYKRIVDEMLVELNLLNHQNE
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
FTLDYLFCVGLTETFKELMKGYQPEKHLDLLFESLCSSTNFEAKEINEISKKSQKELVDK
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
TSKDILKLLVEKNNSKLYPSRILNLGIYTLISNSQDFKEKNESDKNKMTSDIFEKLSLSA
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCH
NKAEKDIGIYKSSISKMEQAKELIEELRIKDKNKNQKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA