| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
Click here to switch to the map view.
The map label for this gene is lhr [C]
Identifier: 123968317
GI number: 123968317
Start: 678055
End: 680541
Strand: Reverse
Name: lhr [C]
Synonym: A9601_07821
Alternate gene names: 123968317
Gene position: 680541-678055 (Counterclockwise)
Preceding gene: 123968318
Following gene: 123968316
Centisome position: 40.75
GC content: 29.96
Gene sequence:
>2487_bases ATGAAAAATATTACGAAAAAGAGTAAGCAAAATAATTTAATTTCTAAAATTAAACAGTTTTTCTCCACAAATGGATGGGA GCCACTACCCTATCAGATCGAATCTTGGGAAGCATTTTTAAATGGAAAGAGTGGCATAATACAAGTTCCTACTGGATGCG GTAAAACTTATGCTGCATTAATGGGCCCTCTATCAAAGATAGAAGATCCCAAAAATAATAAAAGTGTGAATATATTGTTA ATAACCCCTTTAAAAGCACTAAGTAGAGATCTAAAAAATTCTATACAATTAGCAGCTTTGCATTTTAATAAAGAAATCAC TGTTGAAATTAGGAACGGCGATACAACCCCATATGAAAAGAAAAAGCAACTAGCTAAACCACCTAATATTCTTATTACCA CTCCAGAGTCTTTATCTCTTTTACTTTCTAATAAAGAATCTAATAATCTGTTCAAGGAGTTGTCATCAATAATTATTGAC GAATGGCATGAATTGATGGGTAGTAAAAGAGGAAACCAGTGCGAGTTATCTTTAAGTTGGCTAAGAGGTAATATAAAAAA TTTACAAATTTGGGCAATGTCTGCAACTATTGGAAATATTGAAGAAGCAGCAAGAGCAATAGTTGGGATGAGCGCTATTA AACCCAAAATTATAAGTACAAATATTCAAAAAGAGATCGAAATTATAAGTGTTTTACCAGAGGAGGAAACTACCTTTCCA TGGAGTGGACATCTTGGGATTAGAAGTCATTCTTCACTATTAAAAATCCTAGATAAAAATAAAAGCACCTTATTATTCAC CAATACGAGAAATCAATCTGAAAGATGGTATCAATGTTTAAAATTTCTTCTCCCAGAGATGGAAGACAAAATTGCACTTC ATCACGGTTCCCTGGATAAAGAAGATAGAAAAAGAGTTGAAGAAGGGGTTAAAGACGGATTAATAAAATGGGTAGTCTGC ACCAGCTCGTTAGATTTGGGAGTTGACTTCCAACCCGTAGATCAAATAGTTCAAATTGGGAGTGCAAAGAATTTAGCTAG ACTGATCCAAAGAGCGGGAAGAAGTGCTCATAGACCTGGAGGAAAATCAAAAATAATTTTTATGCCTACTAATTCTTTAG AGTTATTAGAGATCAGTGCAATGAGAAGAATAATAAAAAGTGGTATATCTGAGGAAATTAGACTTCCTGAATTATCTTAT GATGTGCTTCTTCAACATCTAATAAGTTTGGCATGCGGAAATGGCTTTGATCCGAGAATTGAGAAAGAAAGAATTAAAAG TTGTTGGAGTTATAGAAACTTAAATGATCATGATTGGAATTGGTGTCTTGACTTTTTAGAGTATGGAGGAAAATGTCTTA AAGCATACCCAAAATATAAAAAGATAGTTAAAGAAGAATCACAAAATAATAATGAAAACTTTAAATATTTTGTAAAAGAC AAATCTTTAATAAGAATGCATAAGTTCAATATTGGGACAATTACTAGTGACAAATTTGTGAATGTTAAATATATGAAAGG GAAATCCTTGGGAAATTTAGAAGAGAATTTTGCCTCAAAATTAAATCCTGGAGATACCTTTTACTTTGCTGGTAAAATGC TTCAATTTATAAGAATCAGAGATATGATTTTATACGTTAAAAAATCAACAAAAAAAAGTTCTCTAATTCCTGCATGGGTT GGAGGTCAAATGGCAATTTCTGATCTACTTTGTGAGAGTTTGAGAAAAGAAATAGATATATGCAACGAAATAGAAAATTA TGATTACTTAAATCCTGAACTCAATTCATTACGCCCAATATTGAAGAAACAAAAAGTTCTTTCAAATATTCCAAAGAAAG ATGAATTCCTTATAGAAATATATAAAACCAAGGATTTATCAAATCTTTTTGTTTTTACACTTGATGGCAAATTTGTAAAT GAAGGAATTGCATTTTTATGGGCTTTGAGATTGGCAAAATTAAAACAATCTACATTTAGTATCACTGCTAATGATTTTGG ATTTAGCTTAACTACTGCAGAAGATTATGATTTTTCAATAATAAAAAAAGAAGCTGATTACTTTTTGAATAACAAAAAAT TAGAAGAAGATCTAGAAAATGCAATTAATTTTTCAGAATTAACAAAACGTAGATTTAAAAATATTGCCCAAATAAGTGGA TTAGTAAATCAAAATAATCCAACCAAAACAAAAACTTCTTCCCAACTTCAAATAAGTTCAAGTCTTTTCTACGAAGTCTT TACTAAATATGAAGAAGACCATCTTTTGATAAAACAATCGCATCAAGAAGTTAAAGAATATCAATTAGAAAATAAAAGAA TATCTAGATCATTAGAAAGATTAAAAAATTTAAAAATGCTACTAAACGAGATAAAAACTCCAACTCCTTTTGCATTCCCT TTATTAGTTGAAAGACTTAAAAATACTTTAAGCAATGAATCAATAGAAAAAAGAGTAGAAAAACTTATAAAAAAATATAG TGATTAA
Upstream 100 bases:
>100_bases TAGCAGTAAGATTTCCAAGGATAACAAAATGGAGAAAAGATAAAAAAATTAATGATGCAGATAGCATTGAGAATGCTTAT GAACTAATGAAGAAAATATC
Downstream 100 bases:
>100_bases ATGAATAAAAGTTCTTTTAAATTTAGTTGGGAAGATACATTGTTAGAGATGCTTCCTTCAAGAGCTTTATTTCTACCAGA AACAAAAGAATTGTTAATAT
Product: DEAD/DEAH box helicase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MKNITKKSKQNNLISKIKQFFSTNGWEPLPYQIESWEAFLNGKSGIIQVPTGCGKTYAALMGPLSKIEDPKNNKSVNILL ITPLKALSRDLKNSIQLAALHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKESNNLFKELSSIIID EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFLLPEMEDKIALHHGSLDKEDRKRVEEGVKDGLIKWVVC TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSY DVLLQHLISLACGNGFDPRIEKERIKSCWSYRNLNDHDWNWCLDFLEYGGKCLKAYPKYKKIVKEESQNNNENFKYFVKD KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFIRIRDMILYVKKSTKKSSLIPAWV GGQMAISDLLCESLRKEIDICNEIENYDYLNPELNSLRPILKKQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVN EGIAFLWALRLAKLKQSTFSITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG LVNQNNPTKTKTSSQLQISSSLFYEVFTKYEEDHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP LLVERLKNTLSNESIEKRVEKLIKKYSD
Sequences:
>Translated_828_residues MKNITKKSKQNNLISKIKQFFSTNGWEPLPYQIESWEAFLNGKSGIIQVPTGCGKTYAALMGPLSKIEDPKNNKSVNILL ITPLKALSRDLKNSIQLAALHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKESNNLFKELSSIIID EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFLLPEMEDKIALHHGSLDKEDRKRVEEGVKDGLIKWVVC TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSY DVLLQHLISLACGNGFDPRIEKERIKSCWSYRNLNDHDWNWCLDFLEYGGKCLKAYPKYKKIVKEESQNNNENFKYFVKD KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFIRIRDMILYVKKSTKKSSLIPAWV GGQMAISDLLCESLRKEIDICNEIENYDYLNPELNSLRPILKKQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVN EGIAFLWALRLAKLKQSTFSITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG LVNQNNPTKTKTSSQLQISSSLFYEVFTKYEEDHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP LLVERLKNTLSNESIEKRVEKLIKKYSD >Mature_828_residues MKNITKKSKQNNLISKIKQFFSTNGWEPLPYQIESWEAFLNGKSGIIQVPTGCGKTYAALMGPLSKIEDPKNNKSVNILL ITPLKALSRDLKNSIQLAALHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKESNNLFKELSSIIID EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFLLPEMEDKIALHHGSLDKEDRKRVEEGVKDGLIKWVVC TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSY DVLLQHLISLACGNGFDPRIEKERIKSCWSYRNLNDHDWNWCLDFLEYGGKCLKAYPKYKKIVKEESQNNNENFKYFVKD KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFIRIRDMILYVKKSTKKSSLIPAWV GGQMAISDLLCESLRKEIDICNEIENYDYLNPELNSLRPILKKQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVN EGIAFLWALRLAKLKQSTFSITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG LVNQNNPTKTKTSSQLQISSSLFYEVFTKYEEDHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP LLVERLKNTLSNESIEKRVEKLIKKYSD
Specific function: Unknown
COG id: COG1201
COG function: function code R; Lhr-like helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI76880486, Length=387, Percent_Identity=23.7726098191214, Blast_Score=74, Evalue=7e-13, Organism=Escherichia coli, GI1787942, Length=861, Percent_Identity=24.5063879210221, Blast_Score=195, Evalue=1e-50, Organism=Saccharomyces cerevisiae, GI9755332, Length=368, Percent_Identity=25.8152173913043, Blast_Score=80, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR013701 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR017170 [H]
Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]
EC number: 3.6.1.-
Molecular weight: Translated: 95063; Mature: 95063
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNITKKSKQNNLISKIKQFFSTNGWEPLPYQIESWEAFLNGKSGIIQVPTGCGKTYAAL CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHH MGPLSKIEDPKNNKSVNILLITPLKALSRDLKNSIQLAALHFNKEITVEIRNGDTTPYEK HCCHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHEEEEEEECCEEEEEEECCCCCCHHH KKQLAKPPNILITTPESLSLLLSNKESNNLFKELSSIIIDEWHELMGSKRGNQCELSLSW HHHHCCCCCEEEECCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH LRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHEEECCCCCCCCC WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFLLPEMEDKIALHHGSLDK CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHEEECCCCCH EDRKRVEEGVKDGLIKWVVCTSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPG HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC GKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSYDVLLQHLISLACGNGFDPRI CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC EKERIKSCWSYRNLNDHDWNWCLDFLEYGGKCLKAYPKYKKIVKEESQNNNENFKYFVKD HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFIRIR CCEEEEEECCCCEECCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHH DMILYVKKSTKKSSLIPAWVGGQMAISDLLCESLRKEIDICNEIENYDYLNPELNSLRPI HHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH LKKQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVNEGIAFLWALRLAKLKQSTFS HHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEE ITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG EEECCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH LVNQNNPTKTKTSSQLQISSSLFYEVFTKYEEDHLLIKQSHQEVKEYQLENKRISRSLER HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LKNLKMLLNEIKTPTPFAFPLLVERLKNTLSNESIEKRVEKLIKKYSD HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MKNITKKSKQNNLISKIKQFFSTNGWEPLPYQIESWEAFLNGKSGIIQVPTGCGKTYAAL CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHH MGPLSKIEDPKNNKSVNILLITPLKALSRDLKNSIQLAALHFNKEITVEIRNGDTTPYEK HCCHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHEEEEEEECCEEEEEEECCCCCCHHH KKQLAKPPNILITTPESLSLLLSNKESNNLFKELSSIIIDEWHELMGSKRGNQCELSLSW HHHHCCCCCEEEECCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH LRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCCHHHHHHHEEECCCCCCCCC WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFLLPEMEDKIALHHGSLDK CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHEEECCCCCH EDRKRVEEGVKDGLIKWVVCTSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPG HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC GKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSYDVLLQHLISLACGNGFDPRI CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC EKERIKSCWSYRNLNDHDWNWCLDFLEYGGKCLKAYPKYKKIVKEESQNNNENFKYFVKD HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFIRIR CCEEEEEECCCCEECCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHH DMILYVKKSTKKSSLIPAWVGGQMAISDLLCESLRKEIDICNEIENYDYLNPELNSLRPI HHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH LKKQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVNEGIAFLWALRLAKLKQSTFS HHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEE ITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG EEECCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH LVNQNNPTKTKTSSQLQISSSLFYEVFTKYEEDHLLIKQSHQEVKEYQLENKRISRSLER HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LKNLKMLLNEIKTPTPFAFPLLVERLKNTLSNESIEKRVEKLIKKYSD HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]