| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is 123967654
Identifier: 123967654
GI number: 123967654
Start: 116080
End: 117015
Strand: Reverse
Name: 123967654
Synonym: A9601_01171
Alternate gene names: NA
Gene position: 117015-116080 (Counterclockwise)
Preceding gene: 123967656
Following gene: 123967651
Centisome position: 7.01
GC content: 31.84
Gene sequence:
>936_bases ATGGCCCTTAAGACTTTAAACAGAAGAAATAAAAAAGATTTGAAATGGCCGAAAATCATAATTGCAATTCTTAGCACTAT AGGCATAGTTGATACAGGTTCAATTACTTTAAAAAACTGGGGAATATTTACTTCGCTTTCATGCCCAGGGATACAAAATG GTTGTGAAACAGTTTTAAATAGTCCTTGGGGTACTTTATTTGAAAATAATAAAGTTAATATACCTCTCTCATTAGCTGGA TTTATAACATATTTATCAATATTAATTATCACAATAATACTCTCGCTTAATTTAATTTCCCCAAAAGAAAAACTAAATAA GTTTTTATGGTGGTTAGTATTTCTAATTTCTTGTGCTTCATCAACATTTAGCTTTTTATTGATAAATATAATGTTTTTTA AAATTCAAGCATATTGCTTTTTTTGTATACTTTCAGCAATTTTATCGTTTTCTATCTTTATAATTTCTATTATTGGAGCA AAGTTCGAGAGTAGAGAACCTATGATTTTTAGAGGTTTCATTGTAGCCATTAGTGTCCTGCTGGGGGGACTAATTTGGTC AACAAACGTTGACCCCTCTAATGCTATTGATATTGCAAACCCCACTGAAAATGTATCCCCAATAATTTCCACCTCAAGCT CCCCCCAGAAGGTAAAGTTTGCAAAATTTTTAAGTGAAAACAATATTGTTATGTATAGTGCATACTGGTGCCCGCATTGC CACGATCAGAAACAATTATTTGGTAAGGAAGCAGTTAAAGAATTAAAAGTAGTTGAGTGTGCTAAAGATGGTAAAGATAA TGAGTATGAGCTATGCCAAACAAAAGGAATAAGTGGATTTCCTTCTTGGGAAATCAATGGAGAAATTATTAGTGGTACGC GTGACTTAAATGAATTAGCGACAAAAACCGACTATCATGGAGATCTTAATTTTTAA
Upstream 100 bases:
>100_bases TAAAAAATAAGAATTAAAAGATTTAAACAGCATTTCGTATATAACTCTCATGCCAAGATAATATTAGGATAGATAATGTA AATAACAAACCTTCTTTTTT
Downstream 100 bases:
>100_bases TAAATCTTTTTTGAATTTTTTGATCTAACTGTTGTCTAGTATGGCATTCCCAATTTTTATCTTTATCAGGGAAATCATCT CTATAATGCCCTCCTCTACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MALKTLNRRNKKDLKWPKIIIAILSTIGIVDTGSITLKNWGIFTSLSCPGIQNGCETVLNSPWGTLFENNKVNIPLSLAG FITYLSILIITIILSLNLISPKEKLNKFLWWLVFLISCASSTFSFLLINIMFFKIQAYCFFCILSAILSFSIFIISIIGA KFESREPMIFRGFIVAISVLLGGLIWSTNVDPSNAIDIANPTENVSPIISTSSSPQKVKFAKFLSENNIVMYSAYWCPHC HDQKQLFGKEAVKELKVVECAKDGKDNEYELCQTKGISGFPSWEINGEIISGTRDLNELATKTDYHGDLNF
Sequences:
>Translated_311_residues MALKTLNRRNKKDLKWPKIIIAILSTIGIVDTGSITLKNWGIFTSLSCPGIQNGCETVLNSPWGTLFENNKVNIPLSLAG FITYLSILIITIILSLNLISPKEKLNKFLWWLVFLISCASSTFSFLLINIMFFKIQAYCFFCILSAILSFSIFIISIIGA KFESREPMIFRGFIVAISVLLGGLIWSTNVDPSNAIDIANPTENVSPIISTSSSPQKVKFAKFLSENNIVMYSAYWCPHC HDQKQLFGKEAVKELKVVECAKDGKDNEYELCQTKGISGFPSWEINGEIISGTRDLNELATKTDYHGDLNF >Mature_310_residues ALKTLNRRNKKDLKWPKIIIAILSTIGIVDTGSITLKNWGIFTSLSCPGIQNGCETVLNSPWGTLFENNKVNIPLSLAGF ITYLSILIITIILSLNLISPKEKLNKFLWWLVFLISCASSTFSFLLINIMFFKIQAYCFFCILSAILSFSIFIISIIGAK FESREPMIFRGFIVAISVLLGGLIWSTNVDPSNAIDIANPTENVSPIISTSSSPQKVKFAKFLSENNIVMYSAYWCPHCH DQKQLFGKEAVKELKVVECAKDGKDNEYELCQTKGISGFPSWEINGEIISGTRDLNELATKTDYHGDLNF
Specific function: Unknown
COG id: COG4243
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34763; Mature: 34632
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALKTLNRRNKKDLKWPKIIIAILSTIGIVDTGSITLKNWGIFTSLSCPGIQNGCETVLN CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCHHHHHHHC SPWGTLFENNKVNIPLSLAGFITYLSILIITIILSLNLISPKEKLNKFLWWLVFLISCAS CCCCHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH STFSFLLINIMFFKIQAYCFFCILSAILSFSIFIISIIGAKFESREPMIFRGFIVAISVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH LGGLIWSTNVDPSNAIDIANPTENVSPIISTSSSPQKVKFAKFLSENNIVMYSAYWCPHC HHHHHEECCCCCCCCEECCCCCCCCCCCEECCCCCCHHHHHHHHCCCCEEEEEEECCCCC HDQKQLFGKEAVKELKVVECAKDGKDNEYELCQTKGISGFPSWEINGEIISGTRDLNELA CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHH TKTDYHGDLNF HCCCCCCCCCC >Mature Secondary Structure ALKTLNRRNKKDLKWPKIIIAILSTIGIVDTGSITLKNWGIFTSLSCPGIQNGCETVLN CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCHHHHHHHC SPWGTLFENNKVNIPLSLAGFITYLSILIITIILSLNLISPKEKLNKFLWWLVFLISCAS CCCCHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH STFSFLLINIMFFKIQAYCFFCILSAILSFSIFIISIIGAKFESREPMIFRGFIVAISVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH LGGLIWSTNVDPSNAIDIANPTENVSPIISTSSSPQKVKFAKFLSENNIVMYSAYWCPHC HHHHHEECCCCCCCCEECCCCCCCCCCCEECCCCCCHHHHHHHHCCCCEEEEEEECCCCC HDQKQLFGKEAVKELKVVECAKDGKDNEYELCQTKGISGFPSWEINGEIISGTRDLNELA CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHH TKTDYHGDLNF HCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA