Click here to switch to the map view.

The map label for this gene is ycbY [C]

Identifier: 123967601

GI number: 123967601

Start: 67907

End: 69031

Strand: Direct

Name: ycbY [C]

Synonym: A9601_00641

Alternate gene names: 123967601

Gene position: 67907-69031 (Clockwise)

Preceding gene: 123967599

Following gene: 123967604

Centisome position: 4.07

GC content: 29.96

Gene sequence:

>1125_bases
ATGAATGTAGTGGCATCATCTCCGGAGGGACTAGAGAAATCTTTAGCAGATGAAATTTCAAATTTAGGCGGCTTTAATAT
TAATACTTATAAAAGATTTGTTAATTTTGAATGTGATTTTGAAACTTTTTATAGAGTTCATTTCTATTCCAGATTAGCGT
TTCGTTTTTATAGAGAAATTGCAAGTTTTAATTGCTATGACAAGCAATCTTTATATGCGGGGGTTAGAGATTCATTTGAT
TGGTTAAATTGGTTGCACTTTGATAAAACCTTTAATGTTCAAGTGACTGGGCGAACATCTTCTTTAAGTCATACTCATTT
CACTGCTCTTGAAGTAAAAAATTCTATAACTGATTTACAACAGGCAGTTTGGAATAAAAGATCAAATATTTCTCTAGTTA
ATCCTGATTTTATAATTCATCTGCACTTAAATAATAATAAAGCAATTCTCAGTCTTCAAAGCAGCGTTGAAAGCTTACAC
AAAAGAGGCTATAGACCTGCAATAGGAAATGCTCCATTAAAAGAAAATTTAGCTTCTGGATTGATAAATATGACTCAATG
GAATGGCAAAGTTCCATTAATAGATTTTATGTGCGGCTCGGGAACTTTTTTAATTGAGGCAGTCAACCAATACCTTGGAG
TTCCTATAAATATTGATCAAGTATATCTTTTTGAGAATTGGTTGGACTTTAGGAAAGATATTTATCTTAATGAAAAAAAT
AAGGCAAAAAATAAAATTATAAATTATGAAAAATTGCCAACAATAATAGGATGTGAAATTAATAAAAAGGTTTTTGAGCA
GGCGAATGTAAACATATCATTAGCTGGACTAGAAAATTATATTGAGCTTATAAATAATGATTTTTTAGCACTCCAATTAA
GTTGCACACCTGGGATAATCATATGTAATCCTCCATACGGCAAAAAATTAGGCGATGAAAATGAATTAATTTATTTATAT
GAACAAATGGGAATCTTCCTAAAGAATAATTTTTCAGGTTGGGAATTTTGGCTGCTAAGTGGAAATCCAAAACTAACAAA
ATATTTGAAAATGAAATCTTCATTGAAAATTCCTGTTAGTAATGGGGGAATAGATTGTAGATGGATAAAGTATTTAATAA
GGTAA

Upstream 100 bases:

>100_bases
TGTCCGAAACATCGGTTGAGATCACCTAGTCCAATTGGACATTTATATTCTGACAGGCAAAATGGTTATTGAATAGTTTT
TTTACTAAGTTTTATCGTAT

Downstream 100 bases:

>100_bases
TTTATTTTTTGCCTAAAACTGCTTTTGTTGTCTTGCCTAAACCCTCTAATGTTTGAGGAAGATATGGTCCTTTGGCTAAT
TTTCCTCCAAGTTTTAAACT

Product: RNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MNVVASSPEGLEKSLADEISNLGGFNINTYKRFVNFECDFETFYRVHFYSRLAFRFYREIASFNCYDKQSLYAGVRDSFD
WLNWLHFDKTFNVQVTGRTSSLSHTHFTALEVKNSITDLQQAVWNKRSNISLVNPDFIIHLHLNNNKAILSLQSSVESLH
KRGYRPAIGNAPLKENLASGLINMTQWNGKVPLIDFMCGSGTFLIEAVNQYLGVPINIDQVYLFENWLDFRKDIYLNEKN
KAKNKIINYEKLPTIIGCEINKKVFEQANVNISLAGLENYIELINNDFLALQLSCTPGIIICNPPYGKKLGDENELIYLY
EQMGIFLKNNFSGWEFWLLSGNPKLTKYLKMKSSLKIPVSNGGIDCRWIKYLIR

Sequences:

>Translated_374_residues
MNVVASSPEGLEKSLADEISNLGGFNINTYKRFVNFECDFETFYRVHFYSRLAFRFYREIASFNCYDKQSLYAGVRDSFD
WLNWLHFDKTFNVQVTGRTSSLSHTHFTALEVKNSITDLQQAVWNKRSNISLVNPDFIIHLHLNNNKAILSLQSSVESLH
KRGYRPAIGNAPLKENLASGLINMTQWNGKVPLIDFMCGSGTFLIEAVNQYLGVPINIDQVYLFENWLDFRKDIYLNEKN
KAKNKIINYEKLPTIIGCEINKKVFEQANVNISLAGLENYIELINNDFLALQLSCTPGIIICNPPYGKKLGDENELIYLY
EQMGIFLKNNFSGWEFWLLSGNPKLTKYLKMKSSLKIPVSNGGIDCRWIKYLIR
>Mature_374_residues
MNVVASSPEGLEKSLADEISNLGGFNINTYKRFVNFECDFETFYRVHFYSRLAFRFYREIASFNCYDKQSLYAGVRDSFD
WLNWLHFDKTFNVQVTGRTSSLSHTHFTALEVKNSITDLQQAVWNKRSNISLVNPDFIIHLHLNNNKAILSLQSSVESLH
KRGYRPAIGNAPLKENLASGLINMTQWNGKVPLIDFMCGSGTFLIEAVNQYLGVPINIDQVYLFENWLDFRKDIYLNEKN
KAKNKIINYEKLPTIIGCEINKKVFEQANVNISLAGLENYIELINNDFLALQLSCTPGIIICNPPYGKKLGDENELIYLY
EQMGIFLKNNFSGWEFWLLSGNPKLTKYLKMKSSLKIPVSNGGIDCRWIKYLIR

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=371, Percent_Identity=30.4582210242588, Blast_Score=169, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43061; Mature: 43061

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVVASSPEGLEKSLADEISNLGGFNINTYKRFVNFECDFETFYRVHFYSRLAFRFYREI
CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHH
ASFNCYDKQSLYAGVRDSFDWLNWLHFDKTFNVQVTGRTSSLSHTHFTALEVKNSITDLQ
HCCCCCCCHHHHHHHHCCHHHHHHEEECCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHH
QAVWNKRSNISLVNPDFIIHLHLNNNKAILSLQSSVESLHKRGYRPAIGNAPLKENLASG
HHHHCCCCCEEEECCCEEEEEEECCCEEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHC
LINMTQWNGKVPLIDFMCGSGTFLIEAVNQYLGVPINIDQVYLFENWLDFRKDIYLNEKN
CEEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHEEECCCC
KAKNKIINYEKLPTIIGCEINKKVFEQANVNISLAGLENYIELINNDFLALQLSCTPGII
HHHHHCCCHHHCCEEEECCCCHHHHHHCCCCEEEECHHHHHHHHCCCEEEEEEECCCCEE
ICNPPYGKKLGDENELIYLYEQMGIFLKNNFSGWEFWLLSGNPKLTKYLKMKSSLKIPVS
EECCCCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEEECCCCHHHHHHHHCCEEEEEC
NGGIDCRWIKYLIR
CCCCCHHHHHHHHC
>Mature Secondary Structure
MNVVASSPEGLEKSLADEISNLGGFNINTYKRFVNFECDFETFYRVHFYSRLAFRFYREI
CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHH
ASFNCYDKQSLYAGVRDSFDWLNWLHFDKTFNVQVTGRTSSLSHTHFTALEVKNSITDLQ
HCCCCCCCHHHHHHHHCCHHHHHHEEECCEEEEEEECCCCCCCCCEEEEEHHHHHHHHHH
QAVWNKRSNISLVNPDFIIHLHLNNNKAILSLQSSVESLHKRGYRPAIGNAPLKENLASG
HHHHCCCCCEEEECCCEEEEEEECCCEEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHC
LINMTQWNGKVPLIDFMCGSGTFLIEAVNQYLGVPINIDQVYLFENWLDFRKDIYLNEKN
CEEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHEEECCCC
KAKNKIINYEKLPTIIGCEINKKVFEQANVNISLAGLENYIELINNDFLALQLSCTPGII
HHHHHCCCHHHCCEEEECCCCHHHHHHCCCCEEEECHHHHHHHHCCCEEEEEEECCCCEE
ICNPPYGKKLGDENELIYLYEQMGIFLKNNFSGWEFWLLSGNPKLTKYLKMKSSLKIPVS
EECCCCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEEECCCCHHHHHHHHCCEEEEEC
NGGIDCRWIKYLIR
CCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]