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The map label for this gene is rbpE [H]

Identifier: 123967549

GI number: 123967549

Start: 16022

End: 16633

Strand: Direct

Name: rbpE [H]

Synonym: A9601_00121

Alternate gene names: 123967549

Gene position: 16022-16633 (Clockwise)

Preceding gene: 123967548

Following gene: 123967551

Centisome position: 0.96

GC content: 46.08

Gene sequence:

>612_bases
GTGAGTATTTTTGTTGGCAATTTGCCTTTCCGCGCAGAGCGCGAAGATGTTATACAATTATTTGCCCCTTTTGGTGAAGT
TTTAAATTGTTCCCTTCCCTTAGAGAGAGATACTGGAAGGAAAAGAGGATTCGCATTTATTGAAATGGCAGATGAAGCGA
TTGAGTCAACAGCTATTGATGGTTTGCAAGGCAGGGAACTTATGGGCAGACCATTAAGAATTAATAAAGCTGAGCCAAGA
AGTTCTGGTGGATCTCGTAGAGGAGGAAGAGGCGGTGGTTATGGTGGAGGTAATAACAGCGGTGGCTATGGCGGTGGCTA
CGGTGGAGGTAATAACAGCGGTGGCTATGGCGGTGGTTATGGTGGAGGTAATAACAGCGGTGGCTATGGCGGTGGCTACG
GTGGTGGCAATAACAGCGGTGGCTATGGCGGTGGCTACGGTGGAGGTAATAACGGATCTAATAGCTCTTACGTTAATAAA
TCTTCTGGAGCAGAAGGCTGGGAAGACAGAAGTTATGGAAATTCTTCTGAAAACTCTGAATATGAAAATGGTAGGAGCAG
GAGAAAGAGGGGAGTGTCCAACGAGAACAATGCTTCAAACGAGACAAATTAG

Upstream 100 bases:

>100_bases
CTACAACAAGGGTATACTTTGAAGTAGAATAGTAAAGCAACGATCTGGGACTACTTATTGTAGTTTTTTTATAAGGTAAT
TTTTCTTTGTTGAGTTTAAA

Downstream 100 bases:

>100_bases
TAACCCATTTCTTTAAGCGCTGTTGTTAATTTAAATAGATATTCAATATTTAATTCTTTTTTTATTGATTTATTTGAAAT
TTGGTTTCTCCAAATTTTAG

Product: RNA recognition motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSIFVGNLPFRAEREDVIQLFAPFGEVLNCSLPLERDTGRKRGFAFIEMADEAIESTAIDGLQGRELMGRPLRINKAEPR
SSGGSRRGGRGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNGSNSSYVNK
SSGAEGWEDRSYGNSSENSEYENGRSRRKRGVSNENNASNETN

Sequences:

>Translated_203_residues
MSIFVGNLPFRAEREDVIQLFAPFGEVLNCSLPLERDTGRKRGFAFIEMADEAIESTAIDGLQGRELMGRPLRINKAEPR
SSGGSRRGGRGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNGSNSSYVNK
SSGAEGWEDRSYGNSSENSEYENGRSRRKRGVSNENNASNETN
>Mature_202_residues
SIFVGNLPFRAEREDVIQLFAPFGEVLNCSLPLERDTGRKRGFAFIEMADEAIESTAIDGLQGRELMGRPLRINKAEPRS
SGGSRRGGRGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNGSNSSYVNKS
SGAEGWEDRSYGNSSENSEYENGRSRRKRGVSNENNASNETN

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=42.8571428571429, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=41.25, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=41.5584415584416, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=34.1772151898734, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 20794; Mature: 20663

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFVGNLPFRAEREDVIQLFAPFGEVLNCSLPLERDTGRKRGFAFIEMADEAIESTAID
CEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHC
GLQGRELMGRPLRINKAEPRSSGGSRRGGRGGGYGGGNNSGGYGGGYGGGNNSGGYGGGY
CCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNGSNSSYVNKSSGAEGWEDRSYGNSSENSE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCH
YENGRSRRKRGVSNENNASNETN
HHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIFVGNLPFRAEREDVIQLFAPFGEVLNCSLPLERDTGRKRGFAFIEMADEAIESTAID
EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHC
GLQGRELMGRPLRINKAEPRSSGGSRRGGRGGGYGGGNNSGGYGGGYGGGNNSGGYGGGY
CCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGGNNSGGYGGGYGGGNNSGGYGGGYGGGNNGSNSSYVNKSSGAEGWEDRSYGNSSENSE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCH
YENGRSRRKRGVSNENNASNETN
HHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]