Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121999143

Identifier: 121999143

GI number: 121999143

Start: 2596253

End: 2598919

Strand: Reverse

Name: 121999143

Synonym: Hhal_2365

Alternate gene names: NA

Gene position: 2598919-2596253 (Counterclockwise)

Preceding gene: 121999145

Following gene: 121999142

Centisome position: 97.03

GC content: 61.6

Gene sequence:

>2667_bases
ATGACCCCCAAGATCCTCAGCGCTTCCCCCCGCGGCTTCCGTCTGCTACTGCTCGCCGGTCTGGCTGGCATATTGATGGC
CTGTGGCGACTCGGATGATGACGACGATAATGGGAACGGCGACACGCCTACGGCCACCCCGTCTTCCATCCAGTTGGAGG
CCCGATCAGGGCAGCGGGAGGTTGTGCTTTCGCTCGACGAAAACACGAGCGTGAATGACTCGCTGGAGATCCTTTGGTCA
CAGGATCCGGATTGTGATTGGGGGGCCAATCATCAGTTTCAGTGCGGAGAAGGGAGTGGATCTGCGGTCCTCAGCGTCGA
GGAAGATTTTGTCGACATTGATGAGGAAGCCAATGAGGTGACGATCCGTGCCGATGAAGATGGGCTGACTCCGGATCGTC
CCCATTTCTTTGTGGTGCAACACGGCGGTGAGCAGAGCAACCGAGCCGCTGCCCGCCCTTACGTGCTCCGTTTTGACGGC
AACATCTATGCGACCGTGGAGCAGGGAGGGTATCTCTACGCCGGAGGGGCGTTCACTCAGTTGAGAGTGCAAACCGGCGG
CGGGGTAGCGGTCACTGCTCGAGATGGTGAGCCTGTTGGCGGGATTCCGCAGATCACCGGGTTCTCGGCTGCCGTGTACG
CCGTCGAACCCGATGGTGACGGTGGTTGGTTCATCGGCGGTGATTTCGAACGCGTTGCGGGAATTCAGCAGCCCTTCGTG
GCCCATGTCGATGCGGACGGCGTCCTCAGCGAAGACTGGTCGCCGCGTTTGGATGGCCCGGTGCGCGCCCTTTCCCGGAA
GGGGGATACGCTCTATATCGGAGGGGACTTCAGCGAAGCAGAAGGAGAGCAACGCTACCAGTTGGCGGCCTACTCGACTG
GTCAGGGCGAGTTGCGGGATTGGAAGGCCCGGGTCGAAGGCAGCGAAGGCAGCACTGCCAGAATCAATGCCCTGGAGAGC
GTGGATGGCGCGGTTTATGTAGGCGGCGAGTTCTCCCGCATTTGGCAGCATCCCGATGAGGATAACGATGAGGCTCGGCC
CCATTTGGCGGCCTTCGATGATGAAGTCGGTCGTTGGCGAGACGGGTTCCGGGGCCAAACCCTGAGTAGTAACGATGTCG
TGCACGCTATTGCCCTATCCGGACCGAATGTCTTCGTCGCCGGCGAGATAGAGAGCGAAGACGCTGCGGGTCTCGCTGCC
TTCCGCGCACTCGGCGAGAGTAACTCGGGCGAGCGCGTAGGTGAGGAAGGCTGGCCAGGAGGCTTTGATCTGGATGGCGC
GGGCACGGCTTACGACCTGGAGGTCACGGACTCCCATCTGCTGGTCGCTGGTGACATCGATGGCTATGTCACGGCCTATG
ACCTATCCGATGATGCTTATGGGGAACGCGACGAAGACTGGCTTCCAGCCTTCTCGGGGCCCGTGCGTGCCATCAGCCAT
GATGGTGACACCGTCTATGCTGGCGGCTCGTTTTCCGACGTAGACGAGCAGAGTCGTTCGAATGTGGCCGCTTTCTCCCG
CGATGCGGATGATAAGGCCACCCTGCGGGAGTGGAATCCCGGTGCCGGAGGCGAGGTTCTCGCATTGGCGGCACAGGGTG
ATGAGGTCTACATCGGCGGCGATTTCCGTCAGGCGAGTGGGTTCCGGCGGGAGCACCTGGTTGCCATGGAACGCGATACC
GGCCGGGTCGCACTTGACTGGACGCCCCGCGTGGACAACACGGTTCTGGCCCTAGAGGCTTCGGAGGATAGGCTGTTCGC
GGGCGGTCGATTTGAGAACATTGGCGAGTATAAGCGCCGGTATCTGGTGGCCTTCCCCAGCGACGATCAAGGGGAAGACG
GCCCCGGTTTCGTGCCGGAACCCGGGGATGCCTTCCCGGCGCCCAACCACTTCGTCTATGCACTCGCCCATGACGGCAAC
GAGACGCTCTTCGCTGGTGGGGGGTTCTGGCAGGTTGACGATGAAGAACGGGGTCGCTTGGCCGCATTTAACCTTAATGG
TGGTGGGCCGTCCCTCGAAGGATCCTTCAATCCGCAGCTGAACAGCACCGTCGATAGTTTGGCCTACGTAGACGATAAGC
TCTACGCTGGCGGGACCTTCACCCAAGCCGACAACGAGGATGTTGGACGGGTGGCTAGTTTCAACGTGTCGTCTCGGAGC
TTGGATGATAGCTGGGGTGTAGGGGTCGGCGATGGGGCGGTCAATGCCATCAGCGTGGCTGACGACCGGGTCTATCTTGG
GGGATCGTTCGACACCGTATGGAAAAGTGACTCGGGCGATGAGCTGGTGATTCGCCCCCTCCTCGCCAGTTGGGATCATA
AAGGAGAACTTCAGAAGTGGGATCCGCAGCTTGAGGGGGGAGCCGTGAGAACCATCCAGCACGCTGGGGACGACGATGTG
CTATATCTGGGCGGACAATTCGACAGGGTGGCAGGCAGGCCGCGGGGCAATCTGGCAGCCGTACGCTCGGGTAGCGCGCA
GCTTGAGGGCTGGGAGCCCAGCGCGAACAGCGAGGTGTATACTTCGGTGCTTTCGGGCGCCGATGGCGCAACGCCTCTCC
TCTTTGTGGGAGGAGCGTTCTCGGAGATCAGCGACGCTCTCCGGAGCCGCCTGGCGGCCATCCGCGCAGACGCAGGGGAG
GGGGATCGGGCCGAAACGAAGTGGTGA

Upstream 100 bases:

>100_bases
ACTCCACCTGCTCGCTTATGCGCCGCCGTTGGCTGCTTGCACAGTCACGGGGCTGCGCATAACCTCGGTTCTATAAACTG
CTGCGAGTGTCTATACCGAC

Downstream 100 bases:

>100_bases
TCCCCCGGCAATGGGCCTAATCTGCCTAAAGAGCCGGTCTGGCTGCCGCCCCCGAGCAGCATGCGTGGGCCCGCGTCGGA
CGGCTGACCCCGGCCACCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Transmembrane Protein; RHS Repeat Family; PDK Repeat-Containing Protein; Ig Family Protein

Number of amino acids: Translated: 888; Mature: 887

Protein sequence:

>888_residues
MTPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQREVVLSLDENTSVNDSLEILWS
QDPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEVTIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDG
NIYATVEQGGYLYAGGAFTQLRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFV
AHVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRDWKARVEGSEGSTARINALES
VDGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWRDGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAA
FRALGESNSGERVGEEGWPGGFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISH
DGDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGGDFRQASGFRREHLVAMERDT
GRVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRRYLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGN
ETLFAGGGFWQVDDEERGRLAAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRS
LDDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKWDPQLEGGAVRTIQHAGDDDV
LYLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVYTSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGE
GDRAETKW

Sequences:

>Translated_888_residues
MTPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQREVVLSLDENTSVNDSLEILWS
QDPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEVTIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDG
NIYATVEQGGYLYAGGAFTQLRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFV
AHVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRDWKARVEGSEGSTARINALES
VDGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWRDGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAA
FRALGESNSGERVGEEGWPGGFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISH
DGDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGGDFRQASGFRREHLVAMERDT
GRVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRRYLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGN
ETLFAGGGFWQVDDEERGRLAAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRS
LDDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKWDPQLEGGAVRTIQHAGDDDV
LYLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVYTSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGE
GDRAETKW
>Mature_887_residues
TPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQREVVLSLDENTSVNDSLEILWSQ
DPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEVTIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDGN
IYATVEQGGYLYAGGAFTQLRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFVA
HVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRDWKARVEGSEGSTARINALESV
DGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWRDGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAAF
RALGESNSGERVGEEGWPGGFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISHD
GDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGGDFRQASGFRREHLVAMERDTG
RVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRRYLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGNE
TLFAGGGFWQVDDEERGRLAAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRSL
DDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKWDPQLEGGAVRTIQHAGDDDVL
YLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVYTSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGEG
DRAETKW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94693; Mature: 94562

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQRE
CCCCCCCCCCCCEEHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
VVLSLDENTSVNDSLEILWSQDPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEV
EEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEE
TIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDGNIYATVEQGGYLYAGGAFTQ
EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCEEEECCCEEE
LRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFV
EEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCCHHHHHCCCCCEE
AHVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRD
EEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCEE
WKARVEGSEGSTARINALESVDGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWR
EHEEECCCCCCEEEEEEHHCCCCEEEECCCHHHHHCCCCCCCCCCCCCEEECCHHHHHHH
DGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAAFRALGESNSGERVGEEGWPG
CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
GFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISH
CCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
DGDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGG
CCCEEEECCCCCCCCHHHHCCEEEECCCCCCCCHHHCCCCCCCCCEEEEEECCCEEEECC
DFRQASGFRREHLVAMERDTGRVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRR
CHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCHHHHCCCE
YLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGNETLFAGGGFWQVDDEERGRL
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEECCCCCCEE
AAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRS
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCEECCCCCCCCCCEEEECCCCCC
LDDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKW
CCCCCCCCCCCCCCEEEEEECCEEEECCCCCEEECCCCCCEEEEEEHHHCCCCCCCCCCC
DPQLEGGAVRTIQHAGDDDVLYLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVY
CCCCCCCEEEEEEECCCCCEEEECCCCHHHCCCCCCCEEEEECCCCEECCCCCCCCCHHH
TSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGEGDRAETKW
HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQRE
CCCCCCCCCCCEEHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
VVLSLDENTSVNDSLEILWSQDPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEV
EEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEE
TIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDGNIYATVEQGGYLYAGGAFTQ
EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCEEEECCCEEE
LRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFV
EEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCCHHHHHCCCCCEE
AHVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRD
EEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCEE
WKARVEGSEGSTARINALESVDGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWR
EHEEECCCCCCEEEEEEHHCCCCEEEECCCHHHHHCCCCCCCCCCCCCEEECCHHHHHHH
DGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAAFRALGESNSGERVGEEGWPG
CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
GFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISH
CCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
DGDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGG
CCCEEEECCCCCCCCHHHHCCEEEECCCCCCCCHHHCCCCCCCCCEEEEEECCCEEEECC
DFRQASGFRREHLVAMERDTGRVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRR
CHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCHHHHCCCE
YLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGNETLFAGGGFWQVDDEERGRL
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEECCCCCCEE
AAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRS
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCEECCCCCCCCCCEEEECCCCCC
LDDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKW
CCCCCCCCCCCCCCEEEEEECCEEEECCCCCEEECCCCCCEEEEEEHHHCCCCCCCCCCC
DPQLEGGAVRTIQHAGDDDVLYLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVY
CCCCCCCEEEEEEECCCCCEEEECCCCHHHCCCCCCCEEEEECCCCEECCCCCCCCCHHH
TSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGEGDRAETKW
HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA