| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121999143
Identifier: 121999143
GI number: 121999143
Start: 2596253
End: 2598919
Strand: Reverse
Name: 121999143
Synonym: Hhal_2365
Alternate gene names: NA
Gene position: 2598919-2596253 (Counterclockwise)
Preceding gene: 121999145
Following gene: 121999142
Centisome position: 97.03
GC content: 61.6
Gene sequence:
>2667_bases ATGACCCCCAAGATCCTCAGCGCTTCCCCCCGCGGCTTCCGTCTGCTACTGCTCGCCGGTCTGGCTGGCATATTGATGGC CTGTGGCGACTCGGATGATGACGACGATAATGGGAACGGCGACACGCCTACGGCCACCCCGTCTTCCATCCAGTTGGAGG CCCGATCAGGGCAGCGGGAGGTTGTGCTTTCGCTCGACGAAAACACGAGCGTGAATGACTCGCTGGAGATCCTTTGGTCA CAGGATCCGGATTGTGATTGGGGGGCCAATCATCAGTTTCAGTGCGGAGAAGGGAGTGGATCTGCGGTCCTCAGCGTCGA GGAAGATTTTGTCGACATTGATGAGGAAGCCAATGAGGTGACGATCCGTGCCGATGAAGATGGGCTGACTCCGGATCGTC CCCATTTCTTTGTGGTGCAACACGGCGGTGAGCAGAGCAACCGAGCCGCTGCCCGCCCTTACGTGCTCCGTTTTGACGGC AACATCTATGCGACCGTGGAGCAGGGAGGGTATCTCTACGCCGGAGGGGCGTTCACTCAGTTGAGAGTGCAAACCGGCGG CGGGGTAGCGGTCACTGCTCGAGATGGTGAGCCTGTTGGCGGGATTCCGCAGATCACCGGGTTCTCGGCTGCCGTGTACG CCGTCGAACCCGATGGTGACGGTGGTTGGTTCATCGGCGGTGATTTCGAACGCGTTGCGGGAATTCAGCAGCCCTTCGTG GCCCATGTCGATGCGGACGGCGTCCTCAGCGAAGACTGGTCGCCGCGTTTGGATGGCCCGGTGCGCGCCCTTTCCCGGAA GGGGGATACGCTCTATATCGGAGGGGACTTCAGCGAAGCAGAAGGAGAGCAACGCTACCAGTTGGCGGCCTACTCGACTG GTCAGGGCGAGTTGCGGGATTGGAAGGCCCGGGTCGAAGGCAGCGAAGGCAGCACTGCCAGAATCAATGCCCTGGAGAGC GTGGATGGCGCGGTTTATGTAGGCGGCGAGTTCTCCCGCATTTGGCAGCATCCCGATGAGGATAACGATGAGGCTCGGCC CCATTTGGCGGCCTTCGATGATGAAGTCGGTCGTTGGCGAGACGGGTTCCGGGGCCAAACCCTGAGTAGTAACGATGTCG TGCACGCTATTGCCCTATCCGGACCGAATGTCTTCGTCGCCGGCGAGATAGAGAGCGAAGACGCTGCGGGTCTCGCTGCC TTCCGCGCACTCGGCGAGAGTAACTCGGGCGAGCGCGTAGGTGAGGAAGGCTGGCCAGGAGGCTTTGATCTGGATGGCGC GGGCACGGCTTACGACCTGGAGGTCACGGACTCCCATCTGCTGGTCGCTGGTGACATCGATGGCTATGTCACGGCCTATG ACCTATCCGATGATGCTTATGGGGAACGCGACGAAGACTGGCTTCCAGCCTTCTCGGGGCCCGTGCGTGCCATCAGCCAT GATGGTGACACCGTCTATGCTGGCGGCTCGTTTTCCGACGTAGACGAGCAGAGTCGTTCGAATGTGGCCGCTTTCTCCCG CGATGCGGATGATAAGGCCACCCTGCGGGAGTGGAATCCCGGTGCCGGAGGCGAGGTTCTCGCATTGGCGGCACAGGGTG ATGAGGTCTACATCGGCGGCGATTTCCGTCAGGCGAGTGGGTTCCGGCGGGAGCACCTGGTTGCCATGGAACGCGATACC GGCCGGGTCGCACTTGACTGGACGCCCCGCGTGGACAACACGGTTCTGGCCCTAGAGGCTTCGGAGGATAGGCTGTTCGC GGGCGGTCGATTTGAGAACATTGGCGAGTATAAGCGCCGGTATCTGGTGGCCTTCCCCAGCGACGATCAAGGGGAAGACG GCCCCGGTTTCGTGCCGGAACCCGGGGATGCCTTCCCGGCGCCCAACCACTTCGTCTATGCACTCGCCCATGACGGCAAC GAGACGCTCTTCGCTGGTGGGGGGTTCTGGCAGGTTGACGATGAAGAACGGGGTCGCTTGGCCGCATTTAACCTTAATGG TGGTGGGCCGTCCCTCGAAGGATCCTTCAATCCGCAGCTGAACAGCACCGTCGATAGTTTGGCCTACGTAGACGATAAGC TCTACGCTGGCGGGACCTTCACCCAAGCCGACAACGAGGATGTTGGACGGGTGGCTAGTTTCAACGTGTCGTCTCGGAGC TTGGATGATAGCTGGGGTGTAGGGGTCGGCGATGGGGCGGTCAATGCCATCAGCGTGGCTGACGACCGGGTCTATCTTGG GGGATCGTTCGACACCGTATGGAAAAGTGACTCGGGCGATGAGCTGGTGATTCGCCCCCTCCTCGCCAGTTGGGATCATA AAGGAGAACTTCAGAAGTGGGATCCGCAGCTTGAGGGGGGAGCCGTGAGAACCATCCAGCACGCTGGGGACGACGATGTG CTATATCTGGGCGGACAATTCGACAGGGTGGCAGGCAGGCCGCGGGGCAATCTGGCAGCCGTACGCTCGGGTAGCGCGCA GCTTGAGGGCTGGGAGCCCAGCGCGAACAGCGAGGTGTATACTTCGGTGCTTTCGGGCGCCGATGGCGCAACGCCTCTCC TCTTTGTGGGAGGAGCGTTCTCGGAGATCAGCGACGCTCTCCGGAGCCGCCTGGCGGCCATCCGCGCAGACGCAGGGGAG GGGGATCGGGCCGAAACGAAGTGGTGA
Upstream 100 bases:
>100_bases ACTCCACCTGCTCGCTTATGCGCCGCCGTTGGCTGCTTGCACAGTCACGGGGCTGCGCATAACCTCGGTTCTATAAACTG CTGCGAGTGTCTATACCGAC
Downstream 100 bases:
>100_bases TCCCCCGGCAATGGGCCTAATCTGCCTAAAGAGCCGGTCTGGCTGCCGCCCCCGAGCAGCATGCGTGGGCCCGCGTCGGA CGGCTGACCCCGGCCACCAA
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; RHS Repeat Family; PDK Repeat-Containing Protein; Ig Family Protein
Number of amino acids: Translated: 888; Mature: 887
Protein sequence:
>888_residues MTPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQREVVLSLDENTSVNDSLEILWS QDPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEVTIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDG NIYATVEQGGYLYAGGAFTQLRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFV AHVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRDWKARVEGSEGSTARINALES VDGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWRDGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAA FRALGESNSGERVGEEGWPGGFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISH DGDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGGDFRQASGFRREHLVAMERDT GRVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRRYLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGN ETLFAGGGFWQVDDEERGRLAAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRS LDDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKWDPQLEGGAVRTIQHAGDDDV LYLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVYTSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGE GDRAETKW
Sequences:
>Translated_888_residues MTPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQREVVLSLDENTSVNDSLEILWS QDPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEVTIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDG NIYATVEQGGYLYAGGAFTQLRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFV AHVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRDWKARVEGSEGSTARINALES VDGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWRDGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAA FRALGESNSGERVGEEGWPGGFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISH DGDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGGDFRQASGFRREHLVAMERDT GRVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRRYLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGN ETLFAGGGFWQVDDEERGRLAAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRS LDDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKWDPQLEGGAVRTIQHAGDDDV LYLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVYTSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGE GDRAETKW >Mature_887_residues TPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQREVVLSLDENTSVNDSLEILWSQ DPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEVTIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDGN IYATVEQGGYLYAGGAFTQLRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFVA HVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRDWKARVEGSEGSTARINALESV DGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWRDGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAAF RALGESNSGERVGEEGWPGGFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISHD GDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGGDFRQASGFRREHLVAMERDTG RVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRRYLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGNE TLFAGGGFWQVDDEERGRLAAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRSL DDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKWDPQLEGGAVRTIQHAGDDDVL YLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVYTSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGEG DRAETKW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94693; Mature: 94562
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQRE CCCCCCCCCCCCEEHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE VVLSLDENTSVNDSLEILWSQDPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEV EEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEE TIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDGNIYATVEQGGYLYAGGAFTQ EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCEEEECCCEEE LRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFV EEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCCHHHHHCCCCCEE AHVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRD EEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCEE WKARVEGSEGSTARINALESVDGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWR EHEEECCCCCCEEEEEEHHCCCCEEEECCCHHHHHCCCCCCCCCCCCCEEECCHHHHHHH DGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAAFRALGESNSGERVGEEGWPG CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC GFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISH CCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC DGDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGG CCCEEEECCCCCCCCHHHHCCEEEECCCCCCCCHHHCCCCCCCCCEEEEEECCCEEEECC DFRQASGFRREHLVAMERDTGRVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRR CHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCHHHHCCCE YLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGNETLFAGGGFWQVDDEERGRL EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEECCCCCCEE AAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRS EEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCEECCCCCCCCCCEEEECCCCCC LDDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKW CCCCCCCCCCCCCCEEEEEECCEEEECCCCCEEECCCCCCEEEEEEHHHCCCCCCCCCCC DPQLEGGAVRTIQHAGDDDVLYLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVY CCCCCCCEEEEEEECCCCCEEEECCCCHHHCCCCCCCEEEEECCCCEECCCCCCCCCHHH TSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGEGDRAETKW HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TPKILSASPRGFRLLLLAGLAGILMACGDSDDDDDNGNGDTPTATPSSIQLEARSGQRE CCCCCCCCCCCEEHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE VVLSLDENTSVNDSLEILWSQDPDCDWGANHQFQCGEGSGSAVLSVEEDFVDIDEEANEV EEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCEE TIRADEDGLTPDRPHFFVVQHGGEQSNRAAARPYVLRFDGNIYATVEQGGYLYAGGAFTQ EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCEEEECCCEEE LRVQTGGGVAVTARDGEPVGGIPQITGFSAAVYAVEPDGDGGWFIGGDFERVAGIQQPFV EEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCCHHHHHCCCCCEE AHVDADGVLSEDWSPRLDGPVRALSRKGDTLYIGGDFSEAEGEQRYQLAAYSTGQGELRD EEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCEE WKARVEGSEGSTARINALESVDGAVYVGGEFSRIWQHPDEDNDEARPHLAAFDDEVGRWR EHEEECCCCCCEEEEEEHHCCCCEEEECCCHHHHHCCCCCCCCCCCCCEEECCHHHHHHH DGFRGQTLSSNDVVHAIALSGPNVFVAGEIESEDAAGLAAFRALGESNSGERVGEEGWPG CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC GFDLDGAGTAYDLEVTDSHLLVAGDIDGYVTAYDLSDDAYGERDEDWLPAFSGPVRAISH CCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC DGDTVYAGGSFSDVDEQSRSNVAAFSRDADDKATLREWNPGAGGEVLALAAQGDEVYIGG CCCEEEECCCCCCCCHHHHCCEEEECCCCCCCCHHHCCCCCCCCCEEEEEECCCEEEECC DFRQASGFRREHLVAMERDTGRVALDWTPRVDNTVLALEASEDRLFAGGRFENIGEYKRR CHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCEEEECCCCCHHHHCCCE YLVAFPSDDQGEDGPGFVPEPGDAFPAPNHFVYALAHDGNETLFAGGGFWQVDDEERGRL EEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEECCCCCCEE AAFNLNGGGPSLEGSFNPQLNSTVDSLAYVDDKLYAGGTFTQADNEDVGRVASFNVSSRS EEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCEECCCCCCCCCCEEEECCCCCC LDDSWGVGVGDGAVNAISVADDRVYLGGSFDTVWKSDSGDELVIRPLLASWDHKGELQKW CCCCCCCCCCCCCCEEEEEECCEEEECCCCCEEECCCCCCEEEEEEHHHCCCCCCCCCCC DPQLEGGAVRTIQHAGDDDVLYLGGQFDRVAGRPRGNLAAVRSGSAQLEGWEPSANSEVY CCCCCCCEEEEEEECCCCCEEEECCCCHHHCCCCCCCEEEEECCCCEECCCCCCCCCHHH TSVLSGADGATPLLFVGGAFSEISDALRSRLAAIRADAGEGDRAETKW HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA