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The map label for this gene is 121999059

Identifier: 121999059

GI number: 121999059

Start: 2503016

End: 2504095

Strand: Reverse

Name: 121999059

Synonym: Hhal_2280

Alternate gene names: NA

Gene position: 2504095-2503016 (Counterclockwise)

Preceding gene: 121999060

Following gene: 121999057

Centisome position: 93.49

GC content: 68.98

Gene sequence:

>1080_bases
ATGCATTCCACTTCAGCCACGAGTGATCGCTACAGGGCGTACCGCTGGGCGGTGAACCGCGCCTATCAGGAGGCAGCGCT
GCCCGGTGTGTCGCGTACCTTTGCGCTGACCATCCCGCAGCTGCCCGAGGTGCTGCGCGATACCGTCACCAACGCCTACC
TGCTGTGTCGGGTGGCGGATACCATCGAAGACCATTCGGCCGCCGACGTGGAGGTCAAACACGACCTGATGCTCGGCCTC
AAGGAGGCCCTGAACGGTGCCCGCGATCCCCAGCAGCTCGCCGGTCAGATCGAAGCCGTGCTCGACTGGGACACGCCGCC
CGCCGAGCGTGACCTGGTCGTCTCGCTGCCGCGGGTGATCGCGGTCACCGGCGGCCTGCCGGAGGCCCACCAGGGGCCGG
TGATCCGCTGCGTCTCGATCATGGGCGAGGGCATGGCGCGCTTTCAGCGCCTGCGCTCGCCGGTCGGGCTGGCCGACCGT
GCGCAGTTCGAAGAGTACTGTTACTACGTCGCCGGCGTGGTGGGCGAGATGCTCACGGACCTGTTCATCCTCGAGGTCGA
AGGTTTCGACGGCGATCGCGACGAGATGATGGACCTGGGGCGGCGCTTCGGCCTGGGGCTGCAGGCGACCAATGTCATCA
AGGACGTCTGGGCCGACCGTGAGCGAGGCGTCTGCTGGCTGCCGCGGGAGATCTTTACCGAGTCCGGTTGCAGCCTGGGC
CCGGACGCCGACTGGAGCGAGGATCCCGGGTTCCATCGCGGCATCGGTCGCATGATCGAGATCGGCGTCGAGCACATGGA
GGCGGCGCGCGCCTACATCCTGCGCATCCCGCCGACGCAGCCCGGTATCCGCCGCTTCTGTGCCTGGGCGGCGACCATGT
CCCTGGCGACCTTGCGGCAGATCCGGCGGCACCCCGGCTTCAAGTCCGGCGACGAGGTGAAGATCAGTCGCCGCCAGGTC
CGCCGCCTGGCGGGACTGACCAACTACGCCGCCGAGCGCGACTGGGCCATGCGCACCGTGCTGGCCTGGAGTGGCCGCGG
CTTGCCGCGGCCGCTGGTCCGCTCGTCGGGGCAGGGCTGA

Upstream 100 bases:

>100_bases
TCGGGCTTCGACGTCTACATGAGCGGTCCGCCACCGATGACCGAGGCCGCGCGGGCGGCCTTTCTCGAGCACGGACTGAA
CCCGGAGCGACTCTTCTACG

Downstream 100 bases:

>100_bases
GCCACCGGGCGCTCGGTGGCTCAGCCGCCGATCTCGGCGAGGAGCCGGTCGATCAGGCGCTGCGATTGGCTCAGGTACAT
GCCGCCGAACAGGTTGAAGT

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: Farnesyl-Diphosphate Farnesyltransferase; Squalene Synthase; Squalene/Phytoene Synthase Family Protein; Squalene And Phytoene Synthase; Squalene Synthetase; Phytoene/Squalene Synthetase Family Protein; Squalene And Phytoene Synthases Superfamily; Squalene/Phytoene Synthase-Like Protein; Phytoene/Squalene Synthetase; SQS PSY Squalene/Phytoene Synthase-Like Protein; Squalene And Phytoene Synthases; Phytoene Synthase

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MHSTSATSDRYRAYRWAVNRAYQEAALPGVSRTFALTIPQLPEVLRDTVTNAYLLCRVADTIEDHSAADVEVKHDLMLGL
KEALNGARDPQQLAGQIEAVLDWDTPPAERDLVVSLPRVIAVTGGLPEAHQGPVIRCVSIMGEGMARFQRLRSPVGLADR
AQFEEYCYYVAGVVGEMLTDLFILEVEGFDGDRDEMMDLGRRFGLGLQATNVIKDVWADRERGVCWLPREIFTESGCSLG
PDADWSEDPGFHRGIGRMIEIGVEHMEAARAYILRIPPTQPGIRRFCAWAATMSLATLRQIRRHPGFKSGDEVKISRRQV
RRLAGLTNYAAERDWAMRTVLAWSGRGLPRPLVRSSGQG

Sequences:

>Translated_359_residues
MHSTSATSDRYRAYRWAVNRAYQEAALPGVSRTFALTIPQLPEVLRDTVTNAYLLCRVADTIEDHSAADVEVKHDLMLGL
KEALNGARDPQQLAGQIEAVLDWDTPPAERDLVVSLPRVIAVTGGLPEAHQGPVIRCVSIMGEGMARFQRLRSPVGLADR
AQFEEYCYYVAGVVGEMLTDLFILEVEGFDGDRDEMMDLGRRFGLGLQATNVIKDVWADRERGVCWLPREIFTESGCSLG
PDADWSEDPGFHRGIGRMIEIGVEHMEAARAYILRIPPTQPGIRRFCAWAATMSLATLRQIRRHPGFKSGDEVKISRRQV
RRLAGLTNYAAERDWAMRTVLAWSGRGLPRPLVRSSGQG
>Mature_359_residues
MHSTSATSDRYRAYRWAVNRAYQEAALPGVSRTFALTIPQLPEVLRDTVTNAYLLCRVADTIEDHSAADVEVKHDLMLGL
KEALNGARDPQQLAGQIEAVLDWDTPPAERDLVVSLPRVIAVTGGLPEAHQGPVIRCVSIMGEGMARFQRLRSPVGLADR
AQFEEYCYYVAGVVGEMLTDLFILEVEGFDGDRDEMMDLGRRFGLGLQATNVIKDVWADRERGVCWLPREIFTESGCSLG
PDADWSEDPGFHRGIGRMIEIGVEHMEAARAYILRIPPTQPGIRRFCAWAATMSLATLRQIRRHPGFKSGDEVKISRRQV
RRLAGLTNYAAERDWAMRTVLAWSGRGLPRPLVRSSGQG

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI67089147, Length=280, Percent_Identity=27.5, Blast_Score=82, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321984, Length=298, Percent_Identity=27.1812080536913, Blast_Score=80, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40019; Mature: 40019

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSTSATSDRYRAYRWAVNRAYQEAALPGVSRTFALTIPQLPEVLRDTVTNAYLLCRVAD
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
TIEDHSAADVEVKHDLMLGLKEALNGARDPQQLAGQIEAVLDWDTPPAERDLVVSLPRVI
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCCHHHHCHHHH
AVTGGLPEAHQGPVIRCVSIMGEGMARFQRLRSPVGLADRAQFEEYCYYVAGVVGEMLTD
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LFILEVEGFDGDRDEMMDLGRRFGLGLQATNVIKDVWADRERGVCWLPREIFTESGCSLG
EEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEECCHHHHHCCCCCCC
PDADWSEDPGFHRGIGRMIEIGVEHMEAARAYILRIPPTQPGIRRFCAWAATMSLATLRQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
IRRHPGFKSGDEVKISRRQVRRLAGLTNYAAERDWAMRTVLAWSGRGLPRPLVRSSGQG
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MHSTSATSDRYRAYRWAVNRAYQEAALPGVSRTFALTIPQLPEVLRDTVTNAYLLCRVAD
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
TIEDHSAADVEVKHDLMLGLKEALNGARDPQQLAGQIEAVLDWDTPPAERDLVVSLPRVI
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCCHHHHCHHHH
AVTGGLPEAHQGPVIRCVSIMGEGMARFQRLRSPVGLADRAQFEEYCYYVAGVVGEMLTD
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LFILEVEGFDGDRDEMMDLGRRFGLGLQATNVIKDVWADRERGVCWLPREIFTESGCSLG
EEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEECCHHHHHCCCCCCC
PDADWSEDPGFHRGIGRMIEIGVEHMEAARAYILRIPPTQPGIRRFCAWAATMSLATLRQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
IRRHPGFKSGDEVKISRRQVRRLAGLTNYAAERDWAMRTVLAWSGRGLPRPLVRSSGQG
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA