| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121999057
Identifier: 121999057
GI number: 121999057
Start: 2499555
End: 2501993
Strand: Reverse
Name: 121999057
Synonym: Hhal_2278
Alternate gene names: NA
Gene position: 2501993-2499555 (Counterclockwise)
Preceding gene: 121999059
Following gene: 121999055
Centisome position: 93.41
GC content: 70.19
Gene sequence:
>2439_bases GTGTCCCGACTCCCCCGTCCCCACGCCTTGCTCACTGCCAGTGCCGCGGCGGCCCTGATGGCCAGCGGCTGCGCTGCCCT CGATGAGGAGTACGAGGCCGCCCTACTGCTCAGCGACCTAGGCGCCGAGGGCCACGAAAAGACCCGCCTGCAGGATCGCG GCGGTGATCCGGAAGTGACCTCCGTCCGCTACGACAAGGGCCAGGGTGAGCGCGAGGCCGACCTCTACCGGCCCGACGGC GAGGCCCGCGGGAACCTGGTGCTGATCCACGGGCTGACCGAGCAGGGCAAGGACGATCGCCGACTGGTGGAGATGGCCGA GAGCCTGACCCGGGTCGGTTACCGGGTCCTGGTGCCCGAGGTAGAGGAGCTCCGTGAGCTGCGCTGGGGGCCGGAGAATC GCGACGACGTGGCTGATGCGGTGCGCCATATGGCCAACCGGGAGGCGAGCCGCGGTCTGCCCCTGGGGGTCAGCACCCTG AGCCTGATGAGCGGCCCGGTGCTGCTCGCCACCGCCGATGACGAATTGCGTCGGCGGGTCGAGTTCGTCGCCCTGATTGG CGGCTATTACGACATCGAGGCGTGGCTGCGCTACGTGACCACCGGTCATGACCCGCTGGCGGATGCCCGGGACGACCCGG AGCCCCGCCCGGAAAGCCGCTGGGTCCTCCTGCAGGCGCTGGCGGCCCGGGTGGACGAGGACGACCGGGAGTGGATGCAG CGCATCGCCGAACGCCGCCTGGACGATCCCGAGGCAGATATCACCGCCGAACGGGCGGCGCTGGGCGAGGAGGCAGCCGC CCTGGTGGATCTGCTGGTCAACGACGACCCGGAGGCCTTCGATGACGACCTGGCGGAGATCCCCGCGGCGTACCGCGAGG CGCTGGACGAGCTGGATCCCTCCCGCCACGACTGGTCGGACTACCACCCGGAGTTGCTGCTGATCCACGGCACCAACGAC CCGGTGGTGCCCTTCTCCCACAGTGAGGCGCTGGAGGCCGCTGCCCCGGATGCGCACCTGTACCGCAGCGCCGGACTCGC CCATGTGGACCTGGAGGGCGGACTGTTCGACAGCGTCCGGCTCTGGCGGGCGGCCTCGGCGCTGCTGGACGTCCGCCTGG ACCCGGAGCAGCCCCTGGCATCGGACCCGGGACGGAATGTCTACATCCCGCCGCGCGGTGAACTCGAGCGCACCCTGCGC GTGGGCGCCGTCTACAACGATGACGAGATCCAGATCCGTTACGAGTTCGCCACCGAGGCCCCGTCCTGGTACCACCAATA CTGGATCTACGAGGTGGAGGGGCGCGGGACCGGCGGCGAGTGGGTGCAATACGGCAGTGGCGGCCCGGAGCCCGATGAGC ACGGCCTCTACGAGGATCGCATCTCCATGCTCCTCGACGATGGGGATCTGGGGCTCGATCGCTACGGCGGCTTCATGACC GCCCACGAGGGCATGCGCGGGCTCACCGGGGCCGCCGAGTCCGAGGAGGTCGAGGCCCATCCCCACCTGGGCGAGACCCT GGGGCGCTCGGACGTGCGCAAGTACATCCCCCAATCGCGGGAGGACGGGGACAACGGTGGCGCGGACTGGCAGGACGTGC GTGATGAGGCCGAGCTCGAGGCCATGCGCGAGCGGGGCGAGTTCCTCGACCTCTGGCAGTGGCGCGCCCACCGTTCCCAC CCGCTGGGCTACGCCGACAACGGCTACGTCCTGGAGTACCGCCACAGCTCCGAGGGGCGGGGGATGTTCACCGACAACTG GGACGACGAGGCCGATCAGCCCCGTTGGATGTACGACCCGGACGAGGCGGGCTTCCGGGCCCTGGAGCGCGACCGGCTAC TGGATGGTGCCTATGACCAGGACGATCTCTACTACCTGAGCGAGGGGCACGCCACCGACTTCGATCCGGACCACCACTGG GAGGACGGCGACGTCCTGCCCCAGCGCTTCCTGCAGGAGCCCGATGGGAGCCGTGGGGCGATCCGCGCCGCTGGCGGCTA TGAGGACGGTGCCTGGCGGGTGCGCCTGACCCGCTCGCTCGAGGCGCCGGAGCCCACCGATAGCCACACCCTGGAGCCGG GCGGGGTCTACGACGTGGCCTTTGCCGTTCACGAGGGCGTGGGCCAGCGCTGGCACCGGGTCTCACTGCCGCAGACGCTC GCCCTGGCCGAGGAAGCGGCGGATGCGCCGGAGGCCGACATCGTGGCCACGCACACGGAGGGCGATCTGGACGATGCCGA CGTGGAGTGGACTGAGGTCGGGTTGATCTACCCGGGGCAGATGACCTGGGACTGGCTCACCGATCGCAGCCCCGCCGGCC ACCCCGGTGCCGGTCATGTCATCGGTGGTGAGCGCGCCATCGGCGACGAGCACCGGCTGCCAAGGTTGCAGGACTACCTG CTCTACGAGGAGCGCCGGCGCATCGATCAGCAGGACTGA
Upstream 100 bases:
>100_bases CTGCTGCTCGGGGGTCGGATGCCCGGAGGACAACGTGCAGAATAGGCGCCTTCGACTCAAGCGTCTCCTGTGCCCGGTTC CATCGATAGCGAGGTCTCCC
Downstream 100 bases:
>100_bases ACCGGCGGAGTCCGGGTGGGCGGGCTAGGGCTCGCGCACCCGCAGCGGGCTGCGGCGGGGAAAGTGCGACTTCAGGAACT CCATCTGGTCGGCGAGGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 812; Mature: 811
Protein sequence:
>812_residues MSRLPRPHALLTASAAAALMASGCAALDEEYEAALLLSDLGAEGHEKTRLQDRGGDPEVTSVRYDKGQGEREADLYRPDG EARGNLVLIHGLTEQGKDDRRLVEMAESLTRVGYRVLVPEVEELRELRWGPENRDDVADAVRHMANREASRGLPLGVSTL SLMSGPVLLATADDELRRRVEFVALIGGYYDIEAWLRYVTTGHDPLADARDDPEPRPESRWVLLQALAARVDEDDREWMQ RIAERRLDDPEADITAERAALGEEAAALVDLLVNDDPEAFDDDLAEIPAAYREALDELDPSRHDWSDYHPELLLIHGTND PVVPFSHSEALEAAAPDAHLYRSAGLAHVDLEGGLFDSVRLWRAASALLDVRLDPEQPLASDPGRNVYIPPRGELERTLR VGAVYNDDEIQIRYEFATEAPSWYHQYWIYEVEGRGTGGEWVQYGSGGPEPDEHGLYEDRISMLLDDGDLGLDRYGGFMT AHEGMRGLTGAAESEEVEAHPHLGETLGRSDVRKYIPQSREDGDNGGADWQDVRDEAELEAMRERGEFLDLWQWRAHRSH PLGYADNGYVLEYRHSSEGRGMFTDNWDDEADQPRWMYDPDEAGFRALERDRLLDGAYDQDDLYYLSEGHATDFDPDHHW EDGDVLPQRFLQEPDGSRGAIRAAGGYEDGAWRVRLTRSLEAPEPTDSHTLEPGGVYDVAFAVHEGVGQRWHRVSLPQTL ALAEEAADAPEADIVATHTEGDLDDADVEWTEVGLIYPGQMTWDWLTDRSPAGHPGAGHVIGGERAIGDEHRLPRLQDYL LYEERRRIDQQD
Sequences:
>Translated_812_residues MSRLPRPHALLTASAAAALMASGCAALDEEYEAALLLSDLGAEGHEKTRLQDRGGDPEVTSVRYDKGQGEREADLYRPDG EARGNLVLIHGLTEQGKDDRRLVEMAESLTRVGYRVLVPEVEELRELRWGPENRDDVADAVRHMANREASRGLPLGVSTL SLMSGPVLLATADDELRRRVEFVALIGGYYDIEAWLRYVTTGHDPLADARDDPEPRPESRWVLLQALAARVDEDDREWMQ RIAERRLDDPEADITAERAALGEEAAALVDLLVNDDPEAFDDDLAEIPAAYREALDELDPSRHDWSDYHPELLLIHGTND PVVPFSHSEALEAAAPDAHLYRSAGLAHVDLEGGLFDSVRLWRAASALLDVRLDPEQPLASDPGRNVYIPPRGELERTLR VGAVYNDDEIQIRYEFATEAPSWYHQYWIYEVEGRGTGGEWVQYGSGGPEPDEHGLYEDRISMLLDDGDLGLDRYGGFMT AHEGMRGLTGAAESEEVEAHPHLGETLGRSDVRKYIPQSREDGDNGGADWQDVRDEAELEAMRERGEFLDLWQWRAHRSH PLGYADNGYVLEYRHSSEGRGMFTDNWDDEADQPRWMYDPDEAGFRALERDRLLDGAYDQDDLYYLSEGHATDFDPDHHW EDGDVLPQRFLQEPDGSRGAIRAAGGYEDGAWRVRLTRSLEAPEPTDSHTLEPGGVYDVAFAVHEGVGQRWHRVSLPQTL ALAEEAADAPEADIVATHTEGDLDDADVEWTEVGLIYPGQMTWDWLTDRSPAGHPGAGHVIGGERAIGDEHRLPRLQDYL LYEERRRIDQQD >Mature_811_residues SRLPRPHALLTASAAAALMASGCAALDEEYEAALLLSDLGAEGHEKTRLQDRGGDPEVTSVRYDKGQGEREADLYRPDGE ARGNLVLIHGLTEQGKDDRRLVEMAESLTRVGYRVLVPEVEELRELRWGPENRDDVADAVRHMANREASRGLPLGVSTLS LMSGPVLLATADDELRRRVEFVALIGGYYDIEAWLRYVTTGHDPLADARDDPEPRPESRWVLLQALAARVDEDDREWMQR IAERRLDDPEADITAERAALGEEAAALVDLLVNDDPEAFDDDLAEIPAAYREALDELDPSRHDWSDYHPELLLIHGTNDP VVPFSHSEALEAAAPDAHLYRSAGLAHVDLEGGLFDSVRLWRAASALLDVRLDPEQPLASDPGRNVYIPPRGELERTLRV GAVYNDDEIQIRYEFATEAPSWYHQYWIYEVEGRGTGGEWVQYGSGGPEPDEHGLYEDRISMLLDDGDLGLDRYGGFMTA HEGMRGLTGAAESEEVEAHPHLGETLGRSDVRKYIPQSREDGDNGGADWQDVRDEAELEAMRERGEFLDLWQWRAHRSHP LGYADNGYVLEYRHSSEGRGMFTDNWDDEADQPRWMYDPDEAGFRALERDRLLDGAYDQDDLYYLSEGHATDFDPDHHWE DGDVLPQRFLQEPDGSRGAIRAAGGYEDGAWRVRLTRSLEAPEPTDSHTLEPGGVYDVAFAVHEGVGQRWHRVSLPQTLA LAEEAADAPEADIVATHTEGDLDDADVEWTEVGLIYPGQMTWDWLTDRSPAGHPGAGHVIGGERAIGDEHRLPRLQDYLL YEERRRIDQQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91073; Mature: 90942
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLPRPHALLTASAAAALMASGCAALDEEYEAALLLSDLGAEGHEKTRLQDRGGDPEVT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEE SVRYDKGQGEREADLYRPDGEARGNLVLIHGLTEQGKDDRRLVEMAESLTRVGYRVLVPE EEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECCC VEELRELRWGPENRDDVADAVRHMANREASRGLPLGVSTLSLMSGPVLLATADDELRRRV HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCEEEEECCHHHHHHH EFVALIGGYYDIEAWLRYVTTGHDPLADARDDPEPRPESRWVLLQALAARVDEDDREWMQ HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH RIAERRLDDPEADITAERAALGEEAAALVDLLVNDDPEAFDDDLAEIPAAYREALDELDP HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC SRHDWSDYHPELLLIHGTNDPVVPFSHSEALEAAAPDAHLYRSAGLAHVDLEGGLFDSVR CCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHCCCEEEECCCCCHHHHH LWRAASALLDVRLDPEQPLASDPGRNVYIPPRGELERTLRVGAVYNDDEIQIRYEFATEA HHHHHHHHHEEEECCCCCCCCCCCCEEEECCCCCHHHHEEECEEECCCEEEEEEEECCCC PSWYHQYWIYEVEGRGTGGEWVQYGSGGPEPDEHGLYEDRISMLLDDGDLGLDRYGGFMT CCCEEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHHHHEECCCCCCHHHHCCCHH AHEGMRGLTGAAESEEVEAHPHLGETLGRSDVRKYIPQSREDGDNGGADWQDVRDEAELE HHHCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH AMRERGEFLDLWQWRAHRSHPLGYADNGYVLEYRHSSEGRGMFTDNWDDEADQPRWMYDP HHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC DEAGFRALERDRLLDGAYDQDDLYYLSEGHATDFDPDHHWEDGDVLPQRFLQEPDGSRGA CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCE IRAAGGYEDGAWRVRLTRSLEAPEPTDSHTLEPGGVYDVAFAVHEGVGQRWHRVSLPQTL EEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCHHH ALAEEAADAPEADIVATHTEGDLDDADVEWTEVGLIYPGQMTWDWLTDRSPAGHPGAGHV HHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEHHHCCCCCCCCCCCCCC IGGERAIGDEHRLPRLQDYLLYEERRRIDQQD CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SRLPRPHALLTASAAAALMASGCAALDEEYEAALLLSDLGAEGHEKTRLQDRGGDPEVT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEE SVRYDKGQGEREADLYRPDGEARGNLVLIHGLTEQGKDDRRLVEMAESLTRVGYRVLVPE EEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECCC VEELRELRWGPENRDDVADAVRHMANREASRGLPLGVSTLSLMSGPVLLATADDELRRRV HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHCCCEEEEECCHHHHHHH EFVALIGGYYDIEAWLRYVTTGHDPLADARDDPEPRPESRWVLLQALAARVDEDDREWMQ HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH RIAERRLDDPEADITAERAALGEEAAALVDLLVNDDPEAFDDDLAEIPAAYREALDELDP HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC SRHDWSDYHPELLLIHGTNDPVVPFSHSEALEAAAPDAHLYRSAGLAHVDLEGGLFDSVR CCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHCCCEEEECCCCCHHHHH LWRAASALLDVRLDPEQPLASDPGRNVYIPPRGELERTLRVGAVYNDDEIQIRYEFATEA HHHHHHHHHEEEECCCCCCCCCCCCEEEECCCCCHHHHEEECEEECCCEEEEEEEECCCC PSWYHQYWIYEVEGRGTGGEWVQYGSGGPEPDEHGLYEDRISMLLDDGDLGLDRYGGFMT CCCEEEEEEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHHHHEECCCCCCHHHHCCCHH AHEGMRGLTGAAESEEVEAHPHLGETLGRSDVRKYIPQSREDGDNGGADWQDVRDEAELE HHHCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH AMRERGEFLDLWQWRAHRSHPLGYADNGYVLEYRHSSEGRGMFTDNWDDEADQPRWMYDP HHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC DEAGFRALERDRLLDGAYDQDDLYYLSEGHATDFDPDHHWEDGDVLPQRFLQEPDGSRGA CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCE IRAAGGYEDGAWRVRLTRSLEAPEPTDSHTLEPGGVYDVAFAVHEGVGQRWHRVSLPQTL EEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCHHH ALAEEAADAPEADIVATHTEGDLDDADVEWTEVGLIYPGQMTWDWLTDRSPAGHPGAGHV HHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEHHHCCCCCCCCCCCCCC IGGERAIGDEHRLPRLQDYLLYEERRRIDQQD CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA